Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5X1G	6701	2024-09-23	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5MSH	3565	2024-09-23	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.75	0.0	0.05	12.31	0.01	2.611	13.00	0.00	6.2	93.6	0.2	-1.01	1.91	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7URi	26713	2024-09-23	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	8J5Y	33733	2024-09-25	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.005	0.94	0.0	0.05	16.17	0.01	2.453	16.44	1.82	9.2	90.6	0.1	-1.51	1.43	0.13	0.08	0.57	10905	1389	4	0	0	0	0	logfile
✔	7RTM	24683	2024-09-25	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	7LJ3	23388	2024-09-30	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	20.50	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	21.69	0.00	2.281	5.53	4.04	4.8	95.1	0.0	2.64	1.40	0.22	0.78	1.64	25714	2564	12	225	0	0	0	logfile
✔	7VZ3	32219	2024-09-27	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.002	0.61	0.0	0.04	14.22	0.00	2.527	8.42	1.42	4.3	95.6	0.1	-1.02	1.70	0.19	0.12	0.37	17415	2256	3	0	0	0	0	logfile
✔	8G9R	29874	2024-09-23	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile
✔	8X63	38078	2024-09-23	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.003	0.75	0.0	0.04	16.99	0.01	2.632	7.24	3.25	8.3	91.7	0.0	0.37	1.30	0.29	0.47	1.06	2252	270	2	0	1	0	0	logfile
✔	6KFK	9974	2024-09-27	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	6.8	0.004	0.87	0.0	0.05	13.01	0.00	2.304	15.80	0.01	6.9	92.3	0.8	-1.20	1.80	0.23	0.28	—	65076	8844	22	0	0	0	0	logfile
✔	7XoV	33360	2024-09-24	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.005	0.98	0.0	0.05	15.45	0.01	2.542	12.22	2.02	4.1	95.7	0.2	-0.03	1.64	0.52	0.67	1.19	8218	1036	6	0	1	1	0	logfile
✔	5M5H	4155	2024-09-23	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.99	0.0	0.06	13.01	0.01	2.385	23.84	0.00	9.5	90.5	0.0	-1.32	1.80	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7URM	26714	2024-09-23	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.73	0.01	2.031	24.03	0.00	0.0	0.0	0.0	—	1.64	0.15	0.52	—	1905	0	1	90	0	0	0	logfile
✔	8RK9	19265	2024-09-23	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8TEK	41189	2024-09-27	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.76	0.0	0.04	19.15	0.00	2.080	15.31	2.29	3.4	96.5	0.1	0.20	2.29	0.18	0.66	0.55	15250	1817	10	0	0	0	0	logfile
✔	7YKS	33896	2024-09-28	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.80	0.0	0.04	16.62	0.00	2.364	7.21	1.33	4.4	95.6	0.0	-0.50	2.17	0.60	0.80	1.50	18984	2364	4	0	0	0	0	logfile
✔	8D43	27173	2024-09-24	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.92	0.0	0.05	18.28	0.01	2.214	17.25	2.38	8.5	91.5	0.0	-1.89	2.69	0.40	0.34	0.78	7763	962	5	0	6	1	0	logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	8CK0	16688	2024-09-23	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile

• Page 1 of 536
• next →