Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	7R6N	24283	2024-09-24	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7R6M	24282	2024-09-24	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	8K15	36786	2024-09-25	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile
✔	8K0S	36779	2024-09-29	2023-07-10	3.41	3.87	3.74	3.4	0.008	1.01	0.0	0.06	25.18	0.01	1.792	8.76	0.00	0.0	0.0	0.0	—	0.76	0.69	—	3.4	0.006	0.73	0.0	0.04	25.50	0.01	1.789	17.10	0.00	0.0	0.0	0.0	—	2.59	0.85	0.88	—	23312	0	4	1086	2	0	0	logfile
✔	8oTF	17177	2024-09-23	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	8K0R	36778	2024-09-29	2023-07-10	2.65	2.96	2.86	2.8	0.010	1.30	0.0	0.07	25.03	0.01	1.812	14.80	0.00	0.0	0.0	0.0	—	0.65	0.67	—	2.7	0.006	0.88	0.0	0.05	25.71	0.01	1.738	15.14	0.00	0.0	0.0	0.0	—	0.91	0.69	0.74	—	23506	0	6	1096	2	0	0	logfile
✔	8K0P	36776	2024-09-29	2023-07-10	2.99	3.19	3.07	3.1	0.008	0.99	0.0	0.06	24.97	0.01	1.792	8.78	0.00	0.0	0.0	0.0	—	0.73	0.80	—	3.1	0.006	0.73	0.0	0.04	24.65	0.01	1.835	8.35	0.00	0.0	0.0	0.0	—	1.24	0.75	0.83	—	23274	0	4	1084	4	0	0	logfile
✔	8KEW	37170	2024-09-23	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.004	0.62	0.0	0.06	16.66	0.00	2.628	2.66	0.67	0.0	100.0	0.0	-0.86	0.39	0.33	0.84	6.28	1500	204	6	0	0	0	0	logfile
✔	8KF5	37199	2024-09-23	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	8K0Q	36777	2024-09-29	2023-07-10	3.14	3.28	3.12	3.2	0.008	1.01	0.0	0.06	25.11	0.01	1.792	9.81	0.00	0.0	0.0	0.0	—	0.72	0.73	—	3.2	0.005	0.68	0.0	0.04	24.57	0.01	1.748	9.98	0.00	0.0	0.0	0.0	—	1.37	0.73	0.74	—	23586	0	6	1100	4	0	0	logfile
✔	8GGU	40021	2024-09-23	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile

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