Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WiZ	37573	2024-09-27	2023-09-25	2.2	2.38	2.23	2.4	0.015	1.78	6.0	0.10	20.31	0.03	0.000	13.55	10.83	2.8	97.2	0.0	-1.91	0.59	0.73	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15306	1722	36	0	18	1068	0	logfile
✘	6PUT	20481	2024-09-25	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10976	1170	28	68	8	308	0	logfile
✘	8QU9	18658	2024-09-28	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✘	8WiY	37572	2024-09-27	2023-09-25	2.31	2.56	2.31	2.6	0.014	1.72	0.0	0.10	19.56	0.02	0.000	10.57	11.25	2.5	97.5	0.0	-1.41	0.56	0.70	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15486	1722	36	0	24	1248	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8WiX	37571	2024-09-27	2023-09-25	2.29	2.42	2.29	2.4	0.015	1.75	0.0	0.10	18.64	0.02	0.000	8.78	9.17	2.8	96.8	0.4	-1.63	0.58	0.74	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1722	36	0	24	702	0	logfile
✘	8AZT	15771	2024-09-23	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8CE7	16600	2024-09-25	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8WJ2	37576	2024-09-27	2023-09-25	2.35	2.51	2.35	2.6	0.015	1.95	12.0	0.10	18.14	0.03	0.000	8.58	11.26	2.1	97.5	0.4	-2.08	0.58	0.73	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14844	1722	36	0	12	1176	0	logfile
✘	8WJ0	37574	2024-09-26	2023-09-25	2.24	2.40	2.24	2.5	0.015	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✘	8WJ1	37575	2024-09-26	2023-09-25	2.27	2.40	2.29	2.5	0.015	1.77	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✔	8PVB	17960	2024-09-28	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.002	0.56	0.0	0.04	14.83	0.00	0.000	4.69	1.37	0.8	99.2	0.0	1.21	0.99	0.72	0.83	3.89	19225	2275	25	0	80	0	0	logfile
✔	7EFC	31083	2024-09-23	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.004	0.77	0.0	0.05	14.45	0.00	2.635	4.29	0.27	4.2	95.8	0.0	-0.32	0.47	0.80	0.85	6.72	4004	480	8	0	4	156	0	logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✘	8JF1	36206	2024-09-27	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✔	6ZP7	11337	2024-09-29	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.004	0.78	0.0	0.08	14.66	0.00	1.946	8.69	2.23	3.7	96.3	0.0	0.14	1.33	0.81	0.84	2.07	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2024-09-29	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.76	0.0	0.08	14.48	0.00	1.956	7.25	2.15	3.3	96.7	0.0	0.26	0.67	0.82	0.84	2.04	23615	2861	33	0	92	0	0	logfile
✔	8AZS	15770	2024-09-24	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.2	0.028	4.05	31.0	0.17	24.42	0.02	2.053	345.81	15.67	48.7	44.4	6.9	-8.17	17.49	0.18	0.16	-0.10	9036	1224	36	0	0	0	0	logfile
✘	8BQW	16189	2024-09-27	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile

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