Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PVB	17960	2024-09-28	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.002	0.56	0.0	0.04	14.83	0.00	0.000	4.69	1.37	0.8	99.2	0.0	1.21	0.99	0.72	0.83	3.89	19225	2275	25	0	80	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	7YHK	33831	2024-09-27	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.022	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.007	0.76	1.0	0.04	15.68	0.01	0.625	7.19	1.84	3.8	96.2	0.0	-1.37	0.42	0.70	0.88	4.09	14502	1812	15	0	18	0	0	logfile
✔	6VQT	21356	2024-09-25	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.72	0.0	0.04	16.80	0.00	0.864	6.57	3.97	3.4	96.6	0.0	2.44	1.05	0.77	0.84	1.28	9144	1168	4	0	6	0	0	logfile
✔	8SHD	40484	2024-09-27	2023-04-13	2.9	3.43	2.96	3.2	0.004	0.54	0.0	0.04	13.80	0.00	1.928	6.69	0.00	3.3	96.7	0.0	1.61	0.84	0.88	3.07	3.2	0.004	0.61	0.0	0.04	15.44	0.00	0.900	6.02	1.01	3.4	96.6	0.0	1.51	0.29	0.84	0.89	2.84	66069	8588	49	0	48	19	0	logfile
✔	7Y04	33537	2024-09-26	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.004	0.63	0.0	0.04	16.68	0.00	0.912	4.74	1.79	5.0	95.0	0.0	-1.18	1.14	0.69	0.78	2.40	12050	1475	7	0	4	0	0	logfile
✔	8SH9	40481	2024-09-27	2023-04-13	2.7	3.31	2.75	3.1	0.004	0.52	0.0	0.04	14.49	0.00	1.955	6.08	0.00	3.4	96.6	0.0	1.77	0.83	0.88	3.18	3.1	0.004	0.61	0.0	0.04	15.63	0.00	0.913	5.65	0.58	3.5	96.5	0.0	1.71	0.26	0.82	0.88	3.00	67197	8725	50	0	48	19	0	logfile
✔	8H77	34519	2024-09-27	2022-10-19	3.2	2.74	3.17	3.1	0.005	0.84	0.0	0.05	15.36	0.00	1.365	13.57	0.12	5.1	94.9	0.0	-1.57	0.59	0.67	2.51	3.1	0.003	0.64	0.0	0.04	17.50	0.00	0.929	7.71	1.79	4.0	96.0	0.0	-0.44	0.66	0.69	0.76	2.10	15726	1930	8	0	4	0	0	logfile
✔	8SG8	40452	2024-09-27	2023-04-11	3.0	3.47	3.09	3.3	0.004	0.54	0.0	0.04	14.66	0.00	1.943	7.29	0.00	3.5	96.5	0.0	1.72	0.82	0.88	2.61	3.3	0.005	0.63	0.0	0.04	15.78	0.00	0.931	6.64	0.68	3.7	96.3	0.0	1.64	0.28	0.83	0.89	2.45	66839	8678	50	0	48	19	0	logfile
✔	8SHA	40482	2024-09-27	2023-04-13	3.0	3.49	3.11	3.3	0.006	0.60	0.0	0.04	14.84	0.00	1.897	7.05	0.00	4.1	95.9	0.0	1.34	0.84	0.89	2.68	3.3	0.003	0.58	0.0	0.04	15.94	0.00	0.936	5.99	0.66	3.3	96.7	0.0	1.56	1.09	0.83	0.89	2.37	67155	8717	50	0	48	19	0	logfile
✔	8UXX	42788	2024-09-30	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.003	0.62	0.0	0.04	15.97	0.00	0.978	4.25	1.64	3.3	96.7	0.0	-0.16	2.06	0.72	0.84	2.45	77402	4916	26	0	27	5	38340	logfile
✔	8PTG	17870	2024-09-28	2023-07-14	2.9	3.32	2.95	3.2	0.004	0.75	0.0	0.04	17.76	0.01	1.427	11.43	3.02	1.4	98.6	0.0	0.98	0.88	0.88	2.69	3.2	0.004	0.72	0.0	0.04	17.62	0.00	0.979	9.46	2.83	1.5	98.5	0.0	0.98	0.71	0.88	0.90	2.68	20292	2514	13	15	18	0	0	logfile
✔	8E5L	27914	2024-09-28	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.89	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.003	0.71	0.0	0.04	12.53	0.00	0.980	15.84	0.00	3.3	96.7	0.0	0.48	1.31	0.88	0.82	—	20058	2502	13	9	18	0	0	logfile
✔	5LMo	4074	2024-09-24	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	26.49	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.79	0.0	0.04	24.10	0.01	0.983	29.63	0.05	9.2	90.2	0.5	-2.01	2.17	0.88	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	7UiM	26549	2024-09-27	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	24.93	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.006	0.84	0.0	0.04	25.39	0.01	0.995	29.70	5.28	6.0	93.7	0.3	-0.29	2.81	0.79	0.76	0.73	14772	387	3	541	15	0	0	logfile
✔	5o5J	3748	2024-09-24	2017-06-02	3.45	3.51	—	3.4	0.008	1.20	0.0	0.05	24.37	0.01	1.740	9.43	11.65	5.4	94.5	0.1	-3.62	0.65	0.87	1.42	3.4	0.005	0.68	0.0	0.04	23.57	0.00	1.006	9.60	5.20	4.6	95.3	0.1	0.11	0.66	0.64	0.85	1.52	52163	2406	28	1536	219	0	0	logfile
✔	8SEB	40409	2024-09-25	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	3.4	0.003	0.64	0.0	0.04	14.66	0.00	1.044	7.95	2.22	3.9	95.9	0.2	0.43	0.57	0.72	0.81	2.03	9609	1223	4	0	1	0	0	logfile
✔	6YRG	10889	2024-09-29	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.008	0.96	4.0	0.06	13.08	0.01	1.048	16.33	0.00	9.6	90.1	0.3	-1.40	3.40	0.77	0.56	—	21992	2736	4	0	0	0	0	logfile
✔	7XCH	33120	2024-09-23	2022-03-24	3.4	3.89	3.93	3.5	0.003	0.58	0.0	0.04	13.97	0.00	2.001	7.63	0.29	3.9	95.9	0.2	0.62	0.76	0.77	1.70	3.5	0.006	0.88	0.0	0.05	15.29	0.01	1.057	13.31	1.79	7.5	92.4	0.1	-0.50	0.83	0.78	0.83	1.80	35749	4381	33	0	72	0	0	logfile
✔	8EW3	28641	2024-09-26	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.59	0.0	0.04	13.49	0.00	1.058	4.66	0.64	2.5	97.5	0.0	1.53	1.18	0.75	0.89	3.30	11902	1540	9	0	5	0	0	logfile

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