Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EUT	19981	2024-09-25	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.003	0.67	0.0	0.04	15.44	0.00	2.566	7.55	1.53	1.7	98.3	0.0	1.59	1.13	0.72	0.80	2.65	11456	1456	4	0	2	0	0	logfile
✔	8ToX	41461	2024-09-29	2023-08-04	2.3	3.05	2.35	2.8	0.005	0.75	0.0	0.05	19.29	0.00	2.205	3.52	0.51	2.9	97.1	0.0	0.74	0.82	0.85	4.45	2.8	0.005	0.91	2.0	0.05	14.88	0.00	1.978	6.47	1.90	2.9	97.1	0.0	0.83	0.39	0.83	0.90	4.36	22008	2490	78	0	159	369	0	logfile
✔	9B61	44234	2024-09-28	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.003	0.69	0.0	0.04	17.27	0.00	2.502	9.67	2.33	2.5	97.5	0.0	1.61	0.40	0.65	0.82	1.88	18447	2384	8	0	0	0	0	logfile
✔	9BiB	44586	2024-09-28	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.63	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.002	0.57	0.0	0.04	11.64	0.00	2.425	3.52	3.72	4.1	95.9	0.0	0.70	0.65	0.68	0.71	1.94	19269	3172	8	0	0	0	0	logfile
✔	9B1K	44082	2024-09-23	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.61	0.0	0.04	13.97	0.00	2.569	5.68	3.15	2.4	97.6	0.0	1.93	1.13	0.54	0.79	2.41	3911	512	2	0	1	0	0	logfile
✔	8UXJ	42766	2024-09-28	2023-11-09	2.71	3.03	2.75	3.0	0.003	0.57	0.0	0.04	11.93	0.00	2.072	7.23	0.04	1.5	98.5	0.0	2.76	0.51	0.82	3.58	3.0	0.004	0.54	0.0	0.04	14.88	0.00	2.358	4.90	1.30	0.8	99.2	0.0	3.78	0.37	0.54	0.85	3.19	69696	9720	36	0	0	0	0	logfile
✔	8JZL	36746	2024-09-29	2023-07-05	2.62	3.57	2.71	3.2	0.009	0.67	0.0	0.05	12.91	0.00	2.353	6.06	0.00	5.3	94.7	0.0	1.22	0.86	0.88	3.01	3.2	0.002	0.58	0.0	0.04	14.78	0.00	2.465	4.97	0.77	3.0	97.0	0.0	2.26	0.62	0.83	0.86	2.64	23184	2988	6	0	0	0	0	logfile
✔	8VQ9	43435	2024-09-25	2024-01-18	2.7	2.88	2.71	2.9	0.010	1.20	0.0	0.08	9.90	0.00	2.511	0.94	0.00	2.9	97.1	0.0	0.54	0.66	0.75	4.36	2.9	0.003	0.55	0.0	0.04	14.13	0.00	2.600	3.47	0.95	1.7	98.3	0.0	2.02	1.11	0.73	0.83	3.53	9513	1278	15	0	27	0	0	logfile
✔	8WTV	37843	2024-09-23	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.06	0.00	2.282	1.05	1.77	2.4	97.6	0.0	1.97	0.20	0.71	0.90	2.81	4325	536	2	0	6	3	0	logfile
✔	8JGS	36245	2024-09-28	2023-05-21	3.96	3.93	3.84	3.9	0.003	0.57	0.0	0.04	13.47	0.01	1.903	15.84	0.00	5.0	95.0	0.0	-0.58	0.38	0.43	0.39	3.9	0.003	0.59	0.0	0.04	15.30	0.00	2.331	13.82	1.50	4.6	95.4	0.0	-0.17	1.09	0.39	0.46	0.35	20268	1278	2	0	0	0	10182	logfile
✔	9CEP	45506	2024-09-28	2024-06-26	3.13	3.60	3.12	3.2	0.007	0.75	0.0	0.04	13.53	0.00	2.092	5.97	0.01	1.3	98.6	0.1	0.78	0.56	0.89	3.19	3.2	0.004	0.48	0.0	0.03	14.39	0.00	2.560	4.03	0.39	1.0	99.0	0.0	4.62	0.87	0.56	0.88	2.53	71669	10027	37	0	0	0	0	logfile
✔	8VQA	43436	2024-09-25	2024-01-18	3.5	3.83	3.41	3.9	0.011	1.34	0.0	0.09	9.89	0.00	2.443	0.78	0.77	2.6	96.7	0.7	0.07	0.62	0.70	3.56	3.9	0.003	0.61	0.0	0.04	12.83	0.00	2.629	3.17	0.64	3.5	96.5	0.0	0.69	1.16	0.71	0.78	3.32	9495	1290	18	0	30	0	0	logfile
✔	8XN3	38496	2024-09-25	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8YKF	39369	2024-09-28	2024-03-05	3.35	3.53	3.41	3.4	0.005	0.78	0.0	0.05	16.25	0.00	2.095	5.00	1.27	2.8	97.1	0.0	-0.06	0.72	0.67	1.83	3.4	0.003	0.54	0.0	0.04	16.69	0.00	2.263	5.09	1.50	3.6	96.4	0.0	0.65	0.72	0.78	0.80	1.64	69382	4208	6	0	0	0	34366	logfile
✔	9BF1	44486	2024-09-28	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.57	0.0	0.04	17.08	0.00	2.483	9.41	1.90	4.5	95.5	0.0	0.67	1.45	0.72	0.73	2.05	18158	2244	2	0	0	0	0	logfile
✔	8YHD	39287	2024-09-29	2024-02-28	2.93	3.18	3.06	3.2	0.008	1.26	0.0	0.07	18.37	0.01	2.251	9.28	2.02	4.1	95.9	0.0	-2.64	0.69	0.80	2.34	3.2	0.005	0.69	0.0	0.05	19.29	0.00	2.320	10.14	2.92	3.5	96.5	0.0	0.04	0.73	0.68	0.82	2.52	23859	2838	25	88	11	0	0	logfile
✔	9CMi	45749	2024-09-24	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.002	0.87	0.0	0.04	15.65	0.00	2.305	7.81	1.97	3.6	96.4	0.0	0.08	0.97	0.76	0.78	2.60	7877	1025	7	0	1	2	0	logfile
✔	8VAE	43089	2024-09-23	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.66	0.0	0.04	17.06	0.00	2.549	8.36	2.36	3.1	96.9	0.0	1.99	0.77	0.83	0.82	1.51	4653	581	2	0	3	0	0	logfile
✔	8oJ4	16904	2024-09-24	2023-03-23	4.35	4.31	4.08	4.2	0.004	0.82	0.0	0.05	13.75	0.00	2.193	8.14	0.26	15.9	83.9	0.2	-4.77	0.79	0.84	—	4.2	0.003	0.78	0.0	0.04	13.79	0.00	2.502	5.80	0.26	9.1	90.9	0.0	-2.22	1.04	0.79	0.84	—	6983	894	7	0	0	0	0	logfile
✔	8UG4	42213	2024-09-24	2023-10-05	3.02	2.74	2.96	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.003	0.48	0.0	0.04	15.45	0.00	2.516	6.44	0.48	2.1	97.9	0.0	3.01	0.92	0.61	0.89	3.32	7802	972	2	0	0	0	0	logfile

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