Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J9G	36095	2024-09-24	2023-05-03	3.5	4.24	3.47	4.0	0.003	0.52	0.0	0.04	19.06	0.00	1.995	16.89	0.25	5.7	94.3	0.0	-1.46	0.82	0.74	1.02	4.0	0.003	0.72	0.0	0.05	19.54	0.00	1.934	15.60	3.86	7.2	92.8	0.0	-1.24	0.52	0.82	0.73	1.11	7868	898	5	24	1	0	0	logfile
✔	8WA3	37390	2024-09-24	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.003	0.73	0.0	0.05	16.59	0.00	2.405	8.55	1.71	5.1	94.9	0.0	0.62	1.62	0.63	0.79	2.00	8163	1031	5	0	0	0	0	logfile
✔	8JBF	36144	2024-09-24	2023-05-08	3.0	2.24	2.87	2.0	0.007	0.86	0.0	0.06	12.83	0.01	2.214	4.23	0.22	5.7	94.3	0.0	-5.19	0.78	0.78	4.30	2.0	0.003	0.65	0.0	0.04	15.29	0.00	2.522	8.12	1.86	4.0	96.0	0.0	-0.75	0.44	0.78	0.79	3.59	8784	1145	6	0	0	0	0	logfile
✔	8TZ4	41733	2024-09-30	2023-08-26	3.23	3.64	3.38	3.6	0.005	0.43	0.0	0.03	12.31	0.00	2.199	1.96	0.00	0.9	99.1	0.0	3.71	0.63	0.81	2.63	3.6	0.003	0.48	0.0	0.04	14.71	0.00	2.148	3.31	0.71	1.6	98.4	0.0	3.50	1.69	0.65	0.85	2.43	24408	1599	4	0	1	0	12165	logfile
✔	8XE9	38283	2024-09-23	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.72	0.0	0.04	15.16	0.00	2.406	8.11	3.40	7.5	92.5	0.0	-1.07	0.94	0.61	0.86	2.81	3266	420	3	0	0	0	0	logfile
✔	8JXX	36716	2024-09-24	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.003	0.57	0.0	0.04	14.97	0.00	2.551	3.55	2.02	3.4	96.6	0.0	1.09	0.33	0.60	0.77	1.73	8493	1103	6	0	1	0	0	logfile
✔	8TZ9	41738	2024-09-30	2023-08-26	3.67	4.03	3.86	3.9	0.009	0.60	0.0	0.04	15.65	0.00	2.295	3.87	0.72	1.7	98.3	0.0	3.31	0.62	0.74	1.58	3.9	0.003	0.55	0.0	0.03	14.97	0.00	2.364	5.52	2.08	1.9	98.1	0.0	3.22	1.16	0.62	0.77	1.15	24297	1599	6	0	3	0	12069	logfile
✔	8JXT	36712	2024-09-24	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.002	0.57	0.0	0.04	14.67	0.00	2.525	4.59	1.65	2.9	97.1	0.0	0.61	1.20	0.56	0.73	1.83	8298	1107	6	0	2	0	0	logfile
✔	8U4R	41892	2024-09-23	2023-09-11	3.1	3.43	3.14	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.003	0.56	0.0	0.04	15.71	0.00	2.543	3.65	1.57	4.2	95.8	0.0	0.90	0.93	0.66	0.88	2.86	4107	513	4	0	1	0	0	logfile
✔	8XJ4	38393	2024-09-23	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.70	0.0	0.04	18.40	0.01	2.424	4.08	1.10	3.3	96.7	0.0	1.50	1.18	0.70	0.79	2.64	5820	693	6	0	12	0	0	logfile
✔	8PEX	17640	2024-09-25	2023-06-15	3.1	3.73	3.20	3.4	0.003	0.64	0.0	0.04	13.39	0.00	1.825	13.86	0.00	2.1	97.9	0.0	0.80	0.88	0.82	1.34	3.3	0.003	0.75	0.0	0.04	16.03	0.00	1.915	12.30	2.06	1.9	98.1	0.0	1.10	0.55	0.90	0.87	1.35	54751	6898	34	0	24	0	0	logfile
✔	8WiD	37564	2024-09-24	2023-09-24	3.5	3.85	3.02	3.4	0.004	0.59	0.0	0.04	23.78	0.01	2.111	10.04	0.78	3.5	96.5	0.0	0.66	0.83	0.88	2.05	3.4	0.006	0.65	0.0	0.04	23.34	0.00	1.946	7.38	3.10	4.4	95.6	0.0	0.71	1.56	0.83	0.89	2.06	51308	2326	23	1533	0	0	0	logfile
✔	8U1M	41817	2024-09-24	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.003	0.67	0.0	0.04	17.20	0.00	1.911	15.42	2.20	4.1	95.9	0.0	-1.02	0.48	0.93	0.74	0.73	7882	957	4	0	4	0	0	logfile
✔	8U1L	41816	2024-09-26	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	2.9	0.005	0.75	0.0	0.04	16.02	0.00	1.910	19.02	2.52	3.8	96.2	0.0	-0.07	0.57	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	8U1N	41818	2024-09-24	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.65	0.0	0.04	18.35	0.00	1.800	13.35	2.79	3.8	96.2	0.0	-1.08	0.99	0.91	0.79	1.43	8164	994	4	0	4	0	0	logfile
✔	8TZ2	41731	2024-09-30	2023-08-26	2.8	3.03	2.88	3.1	0.007	0.75	0.0	0.04	15.02	0.00	2.112	2.01	0.00	1.1	98.9	0.0	3.08	0.63	0.80	3.30	3.1	0.004	0.52	0.0	0.04	16.01	0.00	2.152	2.09	1.66	1.9	98.1	0.0	3.51	0.62	0.62	0.81	2.78	24591	1599	9	0	12	6	12165	logfile
✔	8GEE	29967	2024-09-24	2023-03-06	3.7	3.96	3.74	3.9	0.016	0.82	0.0	0.04	12.17	0.01	2.199	7.10	0.00	1.4	98.6	0.0	1.70	0.70	0.80	2.54	3.9	0.003	0.48	0.0	0.04	14.01	0.00	2.564	5.89	2.16	1.5	98.5	0.0	1.84	0.31	0.70	0.80	1.53	6304	933	5	0	1	1	0	logfile
✔	8J8H	36070	2024-09-24	2023-05-01	3.4	4.16	3.46	3.9	0.004	0.69	0.0	0.05	20.21	0.00	1.914	16.35	0.61	8.5	91.5	0.0	-1.54	0.82	0.77	1.20	3.9	0.003	0.70	0.0	0.05	20.51	0.00	1.929	12.99	3.95	7.8	92.2	0.0	-1.56	0.41	0.82	0.77	1.40	6868	738	5	39	1	0	0	logfile
✔	8J84	36059	2024-09-24	2023-04-30	3.3	4.04	3.29	3.9	0.002	0.58	0.0	0.04	17.27	0.00	2.166	15.78	4.31	5.6	94.4	0.0	-1.01	0.80	0.77	1.33	3.9	0.003	0.63	0.0	0.04	17.44	0.00	2.482	11.62	4.68	5.9	94.1	0.0	-0.98	0.33	0.80	0.77	1.00	7448	906	2	0	0	0	0	logfile
✔	8TZ1	41730	2024-09-30	2023-08-26	2.54	3.16	2.64	3.0	0.011	0.88	0.0	0.04	16.72	0.00	2.123	1.34	0.48	0.9	99.1	0.0	3.54	0.58	0.77	4.42	3.0	0.003	0.48	0.0	0.04	16.55	0.00	2.107	2.40	0.24	2.3	97.7	0.0	3.62	0.62	0.56	0.77	3.27	24852	1599	9	0	21	6	12165	logfile

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