Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6REF	4852	2024-09-25	2019-04-12	3.3	3.37	3.29	3.3	0.006	0.86	0.0	0.05	14.21	0.01	2.220	5.17	0.14	4.4	95.5	0.1	-3.82	0.68	0.81	2.41	3.3	0.002	0.60	0.0	0.04	15.77	0.00	2.005	7.65	1.97	3.3	96.6	0.1	0.70	1.22	0.70	0.85	1.89	53756	7104	37	0	11	0	0	logfile
✔	7XUM	33474	2024-09-23	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.002	0.63	0.0	0.04	16.04	0.00	2.535	7.32	1.63	3.7	96.3	0.0	0.31	0.38	0.56	0.75	0.83	6155	816	2	0	1	0	0	logfile
✔	8DZQ	27805	2024-09-24	2022-08-08	2.82	2.18	2.79	2.1	0.004	0.75	0.0	0.05	13.13	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	1.8	0.002	0.60	0.0	0.04	15.47	0.00	2.308	7.13	1.83	5.4	94.6	0.0	0.25	0.32	0.75	0.74	3.03	8342	1100	6	0	1	0	0	logfile
✔	8H3E	34465	2024-09-30	2022-10-08	3.06	3.44	3.40	3.3	0.005	0.52	0.0	0.04	16.70	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.002	0.53	0.0	0.05	16.84	0.00	2.566	1.38	2.62	4.0	96.0	0.0	-1.55	0.90	0.81	0.88	2.59	24957	3159	6	0	18	0	0	logfile
✔	7YMJ	33930	2024-09-23	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.002	0.55	0.0	0.04	15.11	0.00	2.579	1.79	2.80	3.3	96.7	0.0	0.91	0.36	0.63	0.84	2.18	3085	396	3	0	1	0	0	logfile
✔	7F93	31496	2024-09-29	2021-07-03	3.6	3.95	—	4.0	0.007	1.26	0.0	0.05	16.99	0.01	2.293	3.35	4.00	2.8	97.2	0.0	-5.48	0.56	0.84	2.93	4.1	0.002	0.61	0.0	0.04	15.51	0.00	2.481	6.65	2.10	2.3	97.7	0.0	1.35	0.81	0.56	0.83	2.94	20808	2352	24	0	120	0	0	logfile
✔	7LUV	23527	2024-09-28	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.92	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.64	0.0	0.04	13.45	0.00	2.368	5.62	1.10	4.9	95.1	0.0	0.28	0.89	0.77	0.82	1.93	18773	2168	8	0	210	0	0	logfile
✔	6XF6	22162	2024-09-29	2020-06-15	4.0	4.88	4.07	4.1	0.005	0.80	0.0	0.06	11.19	0.01	2.249	3.71	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.002	0.57	0.0	0.04	12.26	0.00	2.417	7.48	0.81	2.5	97.5	0.0	0.59	1.22	0.87	0.83	—	22938	2928	18	0	59	0	0	logfile
✔	8iP4	35631	2024-09-26	2023-03-14	2.7	3.34	2.82	3.1	0.002	0.44	0.0	0.04	12.81	0.00	2.319	4.04	0.00	1.6	98.4	0.0	3.99	0.73	0.82	2.85	3.1	0.002	0.51	0.0	0.04	15.41	0.00	2.556	6.77	0.98	1.5	98.5	0.0	3.58	0.52	0.72	0.82	3.11	12933	1600	12	0	3	5	0	logfile
✔	7Z4W	14509	2024-09-26	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.54	0.0	0.04	16.67	0.00	2.464	2.64	1.07	3.4	96.6	0.0	1.37	1.19	0.74	0.86	3.84	58942	7242	60	0	0	406	0	logfile
✔	8Q3F	18126	2024-09-23	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	8FEJ	29029	2024-09-25	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8EM7	28241	2024-09-28	2022-09-27	2.97	3.87	3.09	3.0	0.007	1.28	0.0	0.07	12.13	0.01	2.011	3.25	0.43	5.5	94.5	0.0	-0.86	0.79	0.65	2.38	3.1	0.002	0.68	0.0	0.05	13.27	0.00	2.163	5.68	0.55	4.7	95.3	0.0	-0.39	0.55	0.90	0.85	2.28	67552	8756	6	0	214	0	0	logfile
✔	7AA5	11690	2024-09-28	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.41	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	4.4	0.002	0.55	0.0	0.03	13.33	0.00	2.286	56.26	0.00	11.1	88.7	0.2	-0.26	0.86	0.67	0.78	—	19705	2448	5	0	1	0	8	logfile
✔	7TFB	25868	2024-09-24	2022-01-06	2.28	2.41	—	2.5	0.005	0.60	0.0	0.05	16.67	0.00	1.926	6.95	2.11	5.1	94.9	0.1	-0.03	0.48	0.67	4.05	2.5	0.002	0.44	0.0	0.04	16.68	0.00	1.937	18.84	2.20	4.3	95.7	0.0	1.13	0.99	0.71	0.85	3.86	49630	6328	42	0	28	0	140	logfile
✔	8ETH	24409	2024-09-29	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	21.94	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.002	0.58	0.0	0.04	21.74	0.00	2.068	8.45	2.71	4.1	95.7	0.2	0.19	1.12	0.62	0.59	2.28	77577	6161	42	1508	1	0	0	logfile
✔	8BER	16009	2024-09-23	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.002	0.61	0.0	0.04	14.62	0.00	2.514	8.21	0.82	4.2	95.8	0.0	2.94	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	7FEB	31551	2024-09-30	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.002	0.57	0.0	0.04	16.42	0.00	2.207	6.87	1.38	1.9	98.1	0.0	0.98	1.95	0.74	0.84	2.95	24075	3024	9	0	0	0	0	logfile
✔	8CRT	26958	2024-09-28	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	12.63	0.01	2.205	5.06	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.002	0.56	0.0	0.04	14.51	0.00	2.490	8.16	2.09	1.5	98.5	0.0	2.46	0.77	0.51	0.83	2.15	17925	2305	12	0	6	0	0	logfile
✔	8FEL	29032	2024-09-25	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.5	0.002	0.58	0.0	0.04	12.97	0.00	2.425	9.82	0.00	6.1	93.9	0.0	-0.77	2.75	0.75	0.46	—	9201	1191	3	0	0	0	0	logfile

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