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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7BV2 | 30210 | 2024-09-24 | 2020-04-09 | 2.5 | 2.82 | — | 2.8 | 0.005 | 0.74 | 0.0 | 0.05 | 15.37 | 0.00 | 1.942 | 5.42 | 0.00 | 1.3 | 98.7 | 0.0 | 0.03 | 0.77 | 0.83 | 4.56 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 16.39 | 0.00 | 2.262 | 5.07 | 1.02 | 1.4 | 98.6 | 0.0 | 0.99 | 1.11 | 0.68 | 0.81 | 3.54 | 8630 | 1011 | 8 | 25 | 6 | 5 | 0 | logfile |
✔ | 8iWE | 35765 | 2024-09-23 | 2023-03-29 | 3.4 | 3.95 | 3.24 | 3.8 | 0.004 | 0.93 | 1.0 | 0.07 | 16.00 | 0.00 | 2.321 | 10.10 | 2.84 | 5.9 | 94.1 | 0.0 | -0.50 | 0.58 | 0.79 | 2.37 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 15.53 | 0.00 | 2.644 | 2.98 | 1.42 | 3.4 | 96.6 | 0.0 | 1.66 | 1.01 | 0.62 | 0.85 | 2.29 | 2236 | 296 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UWQ | 26838 | 2024-09-28 | 2022-05-03 | 3.05 | 3.55 | 3.19 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 13.81 | 0.00 | 2.313 | 3.18 | 0.00 | 3.0 | 97.0 | 0.0 | -0.63 | 0.70 | 0.86 | 3.23 | 3.5 | 0.002 | 0.49 | 0.0 | 0.04 | 15.14 | 0.00 | 2.575 | 2.83 | 0.73 | 1.4 | 98.6 | 0.0 | 0.72 | 0.27 | 0.71 | 0.86 | 2.29 | 20538 | 2598 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iD8 | 35359 | 2024-09-24 | 2023-02-12 | 3.0 | 3.25 | 3.12 | 3.3 | 0.005 | 0.64 | 0.0 | 0.04 | 13.41 | 0.00 | 1.393 | 8.92 | 0.33 | 3.3 | 96.7 | 0.0 | -0.43 | 0.67 | 0.78 | 2.54 | 3.3 | 0.002 | 0.58 | 0.0 | 0.04 | 15.56 | 0.00 | 2.366 | 4.87 | 1.55 | 2.9 | 97.1 | 0.0 | 0.59 | 1.10 | 0.61 | 0.78 | 2.25 | 8635 | 1137 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2024-09-23 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.68 | 0.0 | 0.03 | 17.96 | 0.00 | 2.555 | 6.38 | 2.63 | 3.7 | 96.3 | 0.0 | 1.12 | 0.78 | 0.27 | 0.78 | 2.63 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iWM | 35771 | 2024-09-23 | 2023-03-30 | 3.17 | 3.65 | 2.80 | 3.5 | 0.004 | 0.76 | 0.0 | 0.04 | 14.98 | 0.00 | 2.390 | 9.55 | 5.26 | 3.4 | 96.6 | 0.0 | -2.66 | 0.56 | 0.76 | 2.24 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 15.21 | 0.00 | 2.616 | 8.26 | 4.21 | 0.7 | 99.3 | 0.0 | 0.39 | 1.19 | 0.59 | 0.77 | 1.96 | 1980 | 271 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7W7W | 32350 | 2024-09-24 | 2021-12-06 | 3.2 | 2.98 | 3.22 | 3.2 | 0.003 | 1.16 | 0.0 | 0.04 | 13.44 | 0.00 | 2.051 | 8.21 | 0.00 | 2.9 | 97.1 | 0.0 | 0.82 | 0.59 | 0.74 | 2.05 | 3.2 | 0.002 | 0.84 | 0.0 | 0.04 | 15.71 | 0.00 | 1.986 | 7.27 | 2.18 | 3.3 | 96.7 | 0.0 | 0.86 | 0.35 | 0.58 | 0.75 | 1.58 | 7870 | 1018 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7W7U | 32348 | 2024-09-24 | 2021-12-06 | 3.0 | 2.54 | 2.92 | 2.9 | 0.003 | 0.56 | 0.0 | 0.04 | 12.54 | 0.00 | 1.966 | 7.56 | 0.00 | 2.6 | 97.4 | 0.0 | 0.77 | 0.59 | 0.77 | 1.85 | 3.0 | 0.002 | 0.53 | 0.0 | 0.04 | 16.27 | 0.00 | 1.985 | 7.30 | 2.09 | 2.3 | 97.7 | 0.0 | 1.05 | 1.31 | 0.59 | 0.79 | 1.65 | 7833 | 1015 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LXV | 30007 | 2024-09-25 | 2020-02-12 | 2.1 | 2.18 | — | 2.2 | 0.025 | 1.66 | 0.0 | 0.12 | 16.13 | 0.01 | 2.196 | 2.01 | 2.81 | 3.9 | 95.9 | 0.1 | -1.79 | 0.78 | 0.91 | 6.69 | 2.2 | 0.002 | 0.57 | 0.0 | 0.04 | 16.39 | 0.00 | 2.161 | 4.23 | 0.51 | 2.7 | 97.3 | 0.0 | 1.21 | 0.94 | 0.79 | 0.90 | 6.06 | 54924 | 6448 | 24 | 0 | 16 | 2967 | 0 | logfile |
✔ | 7LJD | 23391 | 2024-09-24 | 2021-01-28 | 3.2 | 3.31 | — | 3.3 | 0.004 | 0.85 | 0.0 | 0.06 | 8.67 | 0.01 | 2.294 | 3.69 | 0.00 | 2.2 | 97.8 | 0.0 | -2.10 | 0.57 | 0.72 | 2.46 | 3.3 | 0.002 | 0.58 | 0.0 | 0.04 | 13.15 | 0.00 | 2.487 | 5.51 | 1.78 | 2.8 | 97.2 | 0.0 | 1.10 | 0.71 | 0.62 | 0.79 | 1.90 | 8518 | 1046 | 6 | 0 | 11 | 0 | 0 | logfile |
✔ | 8ASW | 15623 | 2024-09-30 | 2022-08-21 | 3.96 | 3.82 | 4.00 | 3.5 | 0.005 | 0.75 | 0.0 | 0.04 | 19.81 | 0.00 | 2.061 | 19.48 | 0.71 | 10.5 | 89.2 | 0.2 | -2.15 | 0.87 | 0.78 | 1.38 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 19.60 | 0.00 | 2.509 | 11.14 | 3.06 | 7.5 | 92.3 | 0.2 | -1.62 | 0.37 | 0.87 | 0.77 | 1.09 | 24781 | 2897 | 6 | 73 | 2 | 0 | 0 | logfile |
✔ | 6VYL | 21463 | 2024-09-26 | 2020-02-27 | 3.4 | 3.43 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 14.42 | 0.01 | 2.293 | 4.68 | 0.48 | 5.1 | 94.9 | 0.0 | -4.60 | 0.72 | 0.84 | 2.99 | 3.4 | 0.002 | 0.53 | 0.0 | 0.04 | 15.72 | 0.00 | 2.553 | 6.14 | 1.79 | 3.1 | 96.9 | 0.0 | -0.02 | 0.51 | 0.66 | 0.82 | 2.77 | 13671 | 1792 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLo | 20370 | 2024-09-26 | 2019-07-01 | 3.3 | 3.50 | — | 3.5 | 0.007 | 1.06 | 0.0 | 0.06 | 12.90 | 0.01 | 2.033 | 6.04 | 0.00 | 4.6 | 95.4 | 0.0 | -5.29 | 0.68 | 0.83 | 3.92 | 3.5 | 0.002 | 0.74 | 0.0 | 0.04 | 13.87 | 0.00 | 2.568 | 8.97 | 2.88 | 5.1 | 94.9 | 0.0 | -1.28 | 0.99 | 0.64 | 0.84 | 3.57 | 14165 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 6P9X | 20277 | 2024-09-24 | 2019-06-10 | 2.91 | 3.05 | 2.91 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 12.46 | 0.00 | 2.211 | 5.46 | 0.23 | 2.1 | 97.9 | 0.0 | -3.97 | 0.64 | 0.82 | 4.18 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 16.03 | 0.00 | 2.555 | 5.15 | 2.05 | 1.9 | 98.1 | 0.0 | 0.78 | 0.46 | 0.66 | 0.84 | 3.13 | 8177 | 1015 | 9 | 0 | 0 | 17 | 0 | logfile |
✔ | 7E8G | 31018 | 2024-09-29 | 2021-03-01 | 4.5 | 3.95 | 4.35 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 13.53 | 0.00 | 2.124 | 16.97 | 0.08 | 8.2 | 91.7 | 0.1 | -1.30 | 0.79 | 0.72 | — | 3.7 | 0.002 | 0.60 | 0.0 | 0.04 | 13.98 | 0.00 | 2.026 | 11.11 | 0.00 | 8.8 | 91.2 | 0.0 | -1.58 | 1.77 | 0.79 | 0.70 | — | 23528 | 2916 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XC2 | 33112 | 2024-09-24 | 2022-03-22 | 3.0 | 3.52 | — | 2.8 | 0.007 | 0.83 | 0.0 | 0.05 | 12.95 | 0.00 | 2.093 | 8.50 | 1.80 | 7.3 | 92.7 | 0.0 | -2.27 | 0.80 | 0.71 | 2.27 | 2.8 | 0.002 | 0.59 | 0.0 | 0.04 | 14.54 | 0.00 | 2.552 | 4.84 | 0.86 | 5.0 | 95.0 | 0.0 | 0.49 | 2.00 | 0.92 | 0.89 | 1.72 | 52070 | 6445 | 15 | 0 | 5 | 0 | 0 | logfile |
✔ | 7TBY | 25801 | 2024-09-26 | 2021-12-22 | 4.0 | 4.05 | 3.80 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 15.63 | 0.00 | 2.155 | 7.36 | 0.00 | 5.0 | 95.0 | 0.0 | -2.45 | 0.70 | 0.79 | — | 3.9 | 0.002 | 0.66 | 0.0 | 0.04 | 14.85 | 0.00 | 2.456 | 7.01 | 2.44 | 5.5 | 94.5 | 0.0 | 0.50 | 1.06 | 0.71 | 0.82 | — | 13281 | 1788 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 7W7T | 32347 | 2024-09-24 | 2021-12-06 | 3.4 | 2.93 | 3.31 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 13.40 | 0.00 | 2.069 | 10.32 | 0.11 | 2.9 | 97.1 | 0.0 | 0.71 | 0.57 | 0.70 | 1.45 | 3.4 | 0.002 | 0.61 | 0.0 | 0.04 | 15.52 | 0.00 | 1.288 | 8.24 | 1.26 | 3.1 | 96.9 | 0.0 | 0.36 | 0.49 | 0.58 | 0.71 | 0.82 | 7903 | 1021 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8D97 | 27257 | 2024-09-26 | 2022-06-09 | 3.8 | 3.96 | 3.72 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 17.28 | 0.00 | 2.113 | 8.76 | 0.00 | 5.1 | 94.9 | 0.0 | -2.43 | 0.87 | 0.87 | 2.06 | 3.8 | 0.002 | 0.50 | 0.0 | 0.04 | 17.80 | 0.00 | 2.504 | 5.08 | 0.57 | 3.2 | 96.8 | 0.0 | -0.02 | 0.42 | 0.87 | 0.85 | 1.96 | 13874 | 1600 | 3 | 42 | 4 | 0 | 0 | logfile |
✔ | 8DS6 | 27684 | 2024-09-25 | 2022-07-21 | 4.9 | 4.18 | 4.54 | 3.7 | 0.012 | 1.43 | 0.0 | 0.06 | 10.65 | 0.01 | 2.494 | 0.39 | 0.00 | 1.4 | 98.6 | 0.0 | 1.06 | 0.85 | 0.67 | — | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 11.64 | 0.01 | 2.466 | 5.43 | 0.00 | 2.1 | 97.9 | 0.0 | 1.90 | 1.10 | 0.85 | 0.62 | — | 10135 | 669 | 2 | 0 | 0 | 0 | 5107 | logfile |