Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EL7	28223	2024-09-23	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.49	0.0	0.04	14.81	0.00	2.548	1.55	1.95	1.9	98.1	0.0	1.63	0.24	0.57	0.80	2.38	4562	604	3	0	0	5	0	logfile
✔	6E9E	9013	2024-09-24	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	13.74	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.54	0.0	0.04	16.28	0.00	2.310	4.12	0.77	1.8	98.2	0.0	0.50	1.11	0.78	0.89	3.49	8163	863	3	51	1	0	0	logfile
✔	7oE3	12860	2024-09-26	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.002	0.59	0.0	0.04	16.18	0.00	2.145	4.40	1.92	6.5	93.5	0.0	0.32	0.43	0.93	0.89	1.51	11904	1478	2	0	2	0	0	logfile
✔	6o0Z	0585	2024-09-26	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	18.94	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.53	0.0	0.04	19.09	0.00	2.526	3.23	2.05	4.8	95.2	0.0	0.12	0.30	0.86	0.89	3.03	11912	1288	4	135	0	0	0	logfile
✔	7RTT	24688	2024-09-24	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.002	0.55	0.0	0.03	15.50	0.00	2.374	5.10	0.75	4.1	95.9	0.0	3.98	1.65	0.60	0.73	0.21	6268	791	8	0	14	0	0	logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	6V9Z	21132	2024-09-25	2019-12-16	3.35	4.22	3.56	3.9	0.014	1.88	0.0	0.09	14.27	0.00	2.382	3.65	2.97	5.1	94.9	0.0	-2.85	0.74	0.80	1.47	3.9	0.002	0.56	0.0	0.04	15.45	0.00	2.583	5.25	1.37	2.1	97.9	0.0	2.20	1.67	0.77	0.86	1.48	11434	1472	4	0	0	0	0	logfile
✔	7T2E	25611	2024-09-23	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.592	1.92	1.57	0.3	99.7	0.0	0.56	0.13	0.36	0.86	4.71	2390	312	2	0	0	0	0	logfile
✔	7N72	24217	2024-09-24	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.13	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.002	0.85	0.0	0.04	14.15	0.00	1.562	5.34	0.94	1.8	98.2	0.0	2.31	0.44	0.70	0.86	2.81	7705	1030	2	0	11	5	0	logfile
✔	7WXU	32881	2024-09-24	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.002	0.57	0.0	0.04	15.70	0.00	2.600	3.39	1.80	2.8	97.2	0.0	0.68	1.16	0.79	0.80	2.36	8116	1034	5	0	0	0	0	logfile
✔	8EL8	28224	2024-09-23	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.43	0.0	0.04	15.26	0.00	2.627	1.59	0.68	1.6	98.4	0.0	1.81	0.28	0.66	0.84	1.38	4467	597	2	0	0	0	0	logfile
✔	7JGF	22325	2024-09-23	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.49	0.0	0.04	13.16	0.00	2.344	47.75	0.41	5.2	94.8	0.0	0.89	0.65	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	8E3Q	27870	2024-09-26	2022-08-17	2.68	2.93	2.73	2.9	0.003	0.57	0.0	0.04	13.14	0.00	2.219	8.89	0.14	4.7	95.0	0.3	-0.58	0.74	0.84	4.68	2.9	0.002	0.58	0.0	0.04	16.23	0.00	2.583	7.39	1.36	4.7	95.2	0.1	-0.58	0.36	0.74	0.86	4.22	12739	1603	4	0	1	0	0	logfile
✔	6UVR	20914	2024-09-29	2019-11-04	4.0	3.50	—	3.4	0.011	1.12	0.0	0.06	8.48	0.01	2.021	10.49	0.00	10.4	89.6	0.0	-5.14	0.62	0.76	—	3.4	0.002	0.54	0.0	0.04	13.27	0.00	2.456	4.37	0.56	5.8	94.2	0.0	2.72	1.43	0.65	0.80	—	22692	1920	12	0	0	0	9696	logfile
✔	7W01	32233	2024-09-26	2021-11-17	3.3	3.43	—	3.4	0.011	1.11	1.0	0.06	16.67	0.01	1.717	9.85	0.60	13.3	85.9	0.8	-4.55	0.68	0.86	2.97	3.4	0.002	0.70	0.0	0.04	17.00	0.00	2.448	4.73	1.87	7.8	91.9	0.3	-1.79	1.58	0.67	0.86	1.72	12724	1598	2	0	7	0	0	logfile
✔	7R8B	24314	2024-09-25	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.49	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	3.3	0.002	0.59	0.0	0.04	14.64	0.00	2.509	4.97	3.12	4.5	95.5	0.0	1.07	0.96	0.73	0.91	2.97	10868	1371	6	0	2	0	0	logfile
✔	8C8P	16490	2024-09-23	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.002	0.69	0.0	0.04	12.74	0.00	2.623	8.99	0.00	3.5	96.5	0.0	-1.34	1.11	0.67	0.71	—	2449	314	2	0	0	0	0	logfile
✔	8DZE	27795	2024-09-28	2022-08-07	2.99	3.47	3.03	3.4	0.008	0.83	0.0	0.05	16.65	0.01	2.289	4.10	0.64	7.0	92.7	0.2	-0.16	0.70	0.79	2.13	3.4	0.002	0.56	0.0	0.04	16.48	0.00	2.436	4.88	2.13	7.7	92.3	0.0	0.99	1.14	0.68	0.81	2.59	19308	2478	12	0	12	0	0	logfile
✔	7ZGo	14709	2024-09-24	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.94	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.46	0.0	0.04	16.06	0.00	2.279	7.90	1.05	2.9	97.1	0.0	2.45	1.09	0.53	0.78	3.18	7754	940	6	0	21	24	0	logfile
✔	7LH3	23335	2024-09-25	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.002	0.58	0.0	0.04	10.63	0.00	2.542	8.15	0.00	2.7	97.3	0.0	2.04	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile

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