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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EL7 | 28223 | 2024-09-23 | 2022-09-23 | 2.8 | 3.11 | 2.95 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 13.13 | 0.00 | 2.295 | 2.43 | 0.00 | 1.7 | 98.3 | 0.0 | 0.97 | 0.57 | 0.80 | 2.31 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 14.81 | 0.00 | 2.548 | 1.55 | 1.95 | 1.9 | 98.1 | 0.0 | 1.63 | 0.24 | 0.57 | 0.80 | 2.38 | 4562 | 604 | 3 | 0 | 0 | 5 | 0 | logfile |
✔ | 6E9E | 9013 | 2024-09-24 | 2018-08-01 | 3.4 | 3.44 | 3.75 | 3.5 | 0.006 | 0.73 | 0.0 | 0.04 | 13.74 | 0.00 | 2.037 | 3.80 | 0.26 | 4.1 | 95.9 | 0.0 | -4.95 | 0.77 | 0.82 | 4.40 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 16.28 | 0.00 | 2.310 | 4.12 | 0.77 | 1.8 | 98.2 | 0.0 | 0.50 | 1.11 | 0.78 | 0.89 | 3.49 | 8163 | 863 | 3 | 51 | 1 | 0 | 0 | logfile |
✔ | 7oE3 | 12860 | 2024-09-26 | 2021-05-01 | 3.35 | 4.05 | 3.43 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.00 | 2.179 | 5.99 | 3.39 | 8.2 | 91.8 | 0.0 | -2.02 | 0.92 | 0.87 | 2.22 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 16.18 | 0.00 | 2.145 | 4.40 | 1.92 | 6.5 | 93.5 | 0.0 | 0.32 | 0.43 | 0.93 | 0.89 | 1.51 | 11904 | 1478 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2024-09-26 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 18.94 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 19.09 | 0.00 | 2.526 | 3.23 | 2.05 | 4.8 | 95.2 | 0.0 | 0.12 | 0.30 | 0.86 | 0.89 | 3.03 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2024-09-24 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 20.57 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.002 | 0.55 | 0.0 | 0.03 | 15.50 | 0.00 | 2.374 | 5.10 | 0.75 | 4.1 | 95.9 | 0.0 | 3.98 | 1.65 | 0.60 | 0.73 | 0.21 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2024-09-26 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.002 | 0.56 | 0.0 | 0.03 | 10.40 | 0.00 | 2.249 | 6.20 | 0.00 | 5.1 | 94.9 | 0.0 | -0.28 | 1.44 | 0.38 | 0.66 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 6V9Z | 21132 | 2024-09-25 | 2019-12-16 | 3.35 | 4.22 | 3.56 | 3.9 | 0.014 | 1.88 | 0.0 | 0.09 | 14.27 | 0.00 | 2.382 | 3.65 | 2.97 | 5.1 | 94.9 | 0.0 | -2.85 | 0.74 | 0.80 | 1.47 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 15.45 | 0.00 | 2.583 | 5.25 | 1.37 | 2.1 | 97.9 | 0.0 | 2.20 | 1.67 | 0.77 | 0.86 | 1.48 | 11434 | 1472 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-09-23 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.19 | 0.00 | 2.592 | 1.92 | 1.57 | 0.3 | 99.7 | 0.0 | 0.56 | 0.13 | 0.36 | 0.86 | 4.71 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N72 | 24217 | 2024-09-24 | 2021-06-09 | 2.5 | 3.08 | 2.57 | 2.9 | 0.007 | 1.35 | 0.0 | 0.06 | 13.13 | 0.01 | 1.971 | 6.06 | 0.00 | 1.4 | 98.6 | 0.0 | -0.87 | 0.72 | 0.85 | 3.04 | 2.9 | 0.002 | 0.85 | 0.0 | 0.04 | 14.15 | 0.00 | 1.562 | 5.34 | 0.94 | 1.8 | 98.2 | 0.0 | 2.31 | 0.44 | 0.70 | 0.86 | 2.81 | 7705 | 1030 | 2 | 0 | 11 | 5 | 0 | logfile |
✔ | 7WXU | 32881 | 2024-09-24 | 2022-02-15 | 2.85 | 2.28 | — | 2.1 | 0.009 | 0.84 | 0.0 | 0.05 | 13.41 | 0.01 | 2.209 | 1.23 | 0.00 | 5.8 | 94.2 | 0.0 | -1.00 | 0.78 | 0.78 | 3.95 | 2.1 | 0.002 | 0.57 | 0.0 | 0.04 | 15.70 | 0.00 | 2.600 | 3.39 | 1.80 | 2.8 | 97.2 | 0.0 | 0.68 | 1.16 | 0.79 | 0.80 | 2.36 | 8116 | 1034 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EL8 | 28224 | 2024-09-23 | 2022-09-23 | 3.2 | 3.53 | 3.33 | 3.5 | 0.007 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.403 | 2.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.75 | 0.66 | 0.85 | 2.31 | 3.5 | 0.002 | 0.43 | 0.0 | 0.04 | 15.26 | 0.00 | 2.627 | 1.59 | 0.68 | 1.6 | 98.4 | 0.0 | 1.81 | 0.28 | 0.66 | 0.84 | 1.38 | 4467 | 597 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2024-09-23 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.7 | 0.002 | 0.49 | 0.0 | 0.04 | 13.16 | 0.00 | 2.344 | 47.75 | 0.41 | 5.2 | 94.8 | 0.0 | 0.89 | 0.65 | 0.41 | 0.45 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 8E3Q | 27870 | 2024-09-26 | 2022-08-17 | 2.68 | 2.93 | 2.73 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.14 | 0.00 | 2.219 | 8.89 | 0.14 | 4.7 | 95.0 | 0.3 | -0.58 | 0.74 | 0.84 | 4.68 | 2.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.23 | 0.00 | 2.583 | 7.39 | 1.36 | 4.7 | 95.2 | 0.1 | -0.58 | 0.36 | 0.74 | 0.86 | 4.22 | 12739 | 1603 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6UVR | 20914 | 2024-09-29 | 2019-11-04 | 4.0 | 3.50 | — | 3.4 | 0.011 | 1.12 | 0.0 | 0.06 | 8.48 | 0.01 | 2.021 | 10.49 | 0.00 | 10.4 | 89.6 | 0.0 | -5.14 | 0.62 | 0.76 | — | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 13.27 | 0.00 | 2.456 | 4.37 | 0.56 | 5.8 | 94.2 | 0.0 | 2.72 | 1.43 | 0.65 | 0.80 | — | 22692 | 1920 | 12 | 0 | 0 | 0 | 9696 | logfile |
✔ | 7W01 | 32233 | 2024-09-26 | 2021-11-17 | 3.3 | 3.43 | — | 3.4 | 0.011 | 1.11 | 1.0 | 0.06 | 16.67 | 0.01 | 1.717 | 9.85 | 0.60 | 13.3 | 85.9 | 0.8 | -4.55 | 0.68 | 0.86 | 2.97 | 3.4 | 0.002 | 0.70 | 0.0 | 0.04 | 17.00 | 0.00 | 2.448 | 4.73 | 1.87 | 7.8 | 91.9 | 0.3 | -1.79 | 1.58 | 0.67 | 0.86 | 1.72 | 12724 | 1598 | 2 | 0 | 7 | 0 | 0 | logfile |
✔ | 7R8B | 24314 | 2024-09-25 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.49 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | 3.3 | 0.002 | 0.59 | 0.0 | 0.04 | 14.64 | 0.00 | 2.509 | 4.97 | 3.12 | 4.5 | 95.5 | 0.0 | 1.07 | 0.96 | 0.73 | 0.91 | 2.97 | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8C8P | 16490 | 2024-09-23 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.002 | 0.69 | 0.0 | 0.04 | 12.74 | 0.00 | 2.623 | 8.99 | 0.00 | 3.5 | 96.5 | 0.0 | -1.34 | 1.11 | 0.67 | 0.71 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DZE | 27795 | 2024-09-28 | 2022-08-07 | 2.99 | 3.47 | 3.03 | 3.4 | 0.008 | 0.83 | 0.0 | 0.05 | 16.65 | 0.01 | 2.289 | 4.10 | 0.64 | 7.0 | 92.7 | 0.2 | -0.16 | 0.70 | 0.79 | 2.13 | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 16.48 | 0.00 | 2.436 | 4.88 | 2.13 | 7.7 | 92.3 | 0.0 | 0.99 | 1.14 | 0.68 | 0.81 | 2.59 | 19308 | 2478 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7ZGo | 14709 | 2024-09-24 | 2022-04-04 | 2.55 | 2.04 | 2.53 | 2.6 | 0.008 | 1.24 | 0.0 | 0.06 | 16.94 | 0.00 | 2.170 | 9.40 | 0.00 | 3.4 | 96.6 | 0.0 | 1.35 | 0.50 | 0.76 | 3.14 | 2.6 | 0.002 | 0.46 | 0.0 | 0.04 | 16.06 | 0.00 | 2.279 | 7.90 | 1.05 | 2.9 | 97.1 | 0.0 | 2.45 | 1.09 | 0.53 | 0.78 | 3.18 | 7754 | 940 | 6 | 0 | 21 | 24 | 0 | logfile |
✔ | 7LH3 | 23335 | 2024-09-25 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.71 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.002 | 0.58 | 0.0 | 0.04 | 10.63 | 0.00 | 2.542 | 8.15 | 0.00 | 2.7 | 97.3 | 0.0 | 2.04 | 1.10 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |