Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BV2	30210	2024-09-24	2020-04-09	2.5	2.82	—	2.8	0.005	0.74	0.0	0.05	15.37	0.00	1.942	5.42	0.00	1.3	98.7	0.0	0.03	0.77	0.83	4.56	2.8	0.002	0.53	0.0	0.04	16.39	0.00	2.262	5.07	1.02	1.4	98.6	0.0	0.99	1.11	0.68	0.81	3.54	8630	1011	8	25	6	5	0	logfile
✔	8iWE	35765	2024-09-23	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.7	0.002	0.59	0.0	0.04	15.53	0.00	2.644	2.98	1.42	3.4	96.6	0.0	1.66	1.01	0.62	0.85	2.29	2236	296	2	0	1	0	0	logfile
✔	7UWQ	26838	2024-09-28	2022-05-03	3.05	3.55	3.19	3.5	0.005	0.57	0.0	0.04	13.81	0.00	2.313	3.18	0.00	3.0	97.0	0.0	-0.63	0.70	0.86	3.23	3.5	0.002	0.49	0.0	0.04	15.14	0.00	2.575	2.83	0.73	1.4	98.6	0.0	0.72	0.27	0.71	0.86	2.29	20538	2598	6	0	0	0	0	logfile
✔	8iD8	35359	2024-09-24	2023-02-12	3.0	3.25	3.12	3.3	0.005	0.64	0.0	0.04	13.41	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.002	0.58	0.0	0.04	15.56	0.00	2.366	4.87	1.55	2.9	97.1	0.0	0.59	1.10	0.61	0.78	2.25	8635	1137	6	0	1	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	8iWM	35771	2024-09-23	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.63	0.0	0.04	15.21	0.00	2.616	8.26	4.21	0.7	99.3	0.0	0.39	1.19	0.59	0.77	1.96	1980	271	2	0	1	0	0	logfile
✔	7W7W	32350	2024-09-24	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.71	0.00	1.986	7.27	2.18	3.3	96.7	0.0	0.86	0.35	0.58	0.75	1.58	7870	1018	2	0	2	0	0	logfile
✔	7W7U	32348	2024-09-24	2021-12-06	3.0	2.54	2.92	2.9	0.003	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.002	0.53	0.0	0.04	16.27	0.00	1.985	7.30	2.09	2.3	97.7	0.0	1.05	1.31	0.59	0.79	1.65	7833	1015	2	0	2	0	0	logfile
✔	6LXV	30007	2024-09-25	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.13	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.39	0.00	2.161	4.23	0.51	2.7	97.3	0.0	1.21	0.94	0.79	0.90	6.06	54924	6448	24	0	16	2967	0	logfile
✔	7LJD	23391	2024-09-24	2021-01-28	3.2	3.31	—	3.3	0.004	0.85	0.0	0.06	8.67	0.01	2.294	3.69	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	3.3	0.002	0.58	0.0	0.04	13.15	0.00	2.487	5.51	1.78	2.8	97.2	0.0	1.10	0.71	0.62	0.79	1.90	8518	1046	6	0	11	0	0	logfile
✔	8ASW	15623	2024-09-30	2022-08-21	3.96	3.82	4.00	3.5	0.005	0.75	0.0	0.04	19.81	0.00	2.061	19.48	0.71	10.5	89.2	0.2	-2.15	0.87	0.78	1.38	3.5	0.002	0.63	0.0	0.04	19.60	0.00	2.509	11.14	3.06	7.5	92.3	0.2	-1.62	0.37	0.87	0.77	1.09	24781	2897	6	73	2	0	0	logfile
✔	6VYL	21463	2024-09-26	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.84	2.99	3.4	0.002	0.53	0.0	0.04	15.72	0.00	2.553	6.14	1.79	3.1	96.9	0.0	-0.02	0.51	0.66	0.82	2.77	13671	1792	7	0	0	0	0	logfile
✔	6PLo	20370	2024-09-26	2019-07-01	3.3	3.50	—	3.5	0.007	1.06	0.0	0.06	12.90	0.01	2.033	6.04	0.00	4.6	95.4	0.0	-5.29	0.68	0.83	3.92	3.5	0.002	0.74	0.0	0.04	13.87	0.00	2.568	8.97	2.88	5.1	94.9	0.0	-1.28	0.99	0.64	0.84	3.57	14165	1730	15	0	20	0	0	logfile
✔	6P9X	20277	2024-09-24	2019-06-10	2.91	3.05	2.91	3.1	0.004	0.57	0.0	0.04	12.46	0.00	2.211	5.46	0.23	2.1	97.9	0.0	-3.97	0.64	0.82	4.18	3.1	0.002	0.55	0.0	0.04	16.03	0.00	2.555	5.15	2.05	1.9	98.1	0.0	0.78	0.46	0.66	0.84	3.13	8177	1015	9	0	0	17	0	logfile
✔	7E8G	31018	2024-09-29	2021-03-01	4.5	3.95	4.35	3.7	0.003	0.59	0.0	0.04	13.53	0.00	2.124	16.97	0.08	8.2	91.7	0.1	-1.30	0.79	0.72	—	3.7	0.002	0.60	0.0	0.04	13.98	0.00	2.026	11.11	0.00	8.8	91.2	0.0	-1.58	1.77	0.79	0.70	—	23528	2916	4	0	0	0	0	logfile
✔	7XC2	33112	2024-09-24	2022-03-22	3.0	3.52	—	2.8	0.007	0.83	0.0	0.05	12.95	0.00	2.093	8.50	1.80	7.3	92.7	0.0	-2.27	0.80	0.71	2.27	2.8	0.002	0.59	0.0	0.04	14.54	0.00	2.552	4.84	0.86	5.0	95.0	0.0	0.49	2.00	0.92	0.89	1.72	52070	6445	15	0	5	0	0	logfile
✔	7TBY	25801	2024-09-26	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.61	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.9	0.002	0.66	0.0	0.04	14.85	0.00	2.456	7.01	2.44	5.5	94.5	0.0	0.50	1.06	0.71	0.82	—	13281	1788	4	0	10	0	0	logfile
✔	7W7T	32347	2024-09-24	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.002	0.61	0.0	0.04	15.52	0.00	1.288	8.24	1.26	3.1	96.9	0.0	0.36	0.49	0.58	0.71	0.82	7903	1021	2	0	4	0	0	logfile
✔	8D97	27257	2024-09-26	2022-06-09	3.8	3.96	3.72	3.8	0.004	0.64	0.0	0.04	17.28	0.00	2.113	8.76	0.00	5.1	94.9	0.0	-2.43	0.87	0.87	2.06	3.8	0.002	0.50	0.0	0.04	17.80	0.00	2.504	5.08	0.57	3.2	96.8	0.0	-0.02	0.42	0.87	0.85	1.96	13874	1600	3	42	4	0	0	logfile
✔	8DS6	27684	2024-09-25	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.002	0.56	0.0	0.04	11.64	0.01	2.466	5.43	0.00	2.1	97.9	0.0	1.90	1.10	0.85	0.62	—	10135	669	2	0	0	0	5107	logfile

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