Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LBY	23267	2024-09-25	2021-01-09	4.2	4.35	—	4.3	0.003	0.78	0.0	0.05	12.33	0.00	2.148	4.15	0.00	6.2	92.5	1.3	-0.24	0.56	0.69	—	4.3	0.004	0.68	0.0	0.04	12.01	0.00	2.470	6.36	0.00	7.3	92.3	0.4	-0.11	0.61	0.57	0.71	—	8800	1418	2	0	0	0	0	logfile
✔	7T5o	25699	2024-09-29	2021-12-12	3.39	3.68	—	3.5	0.007	1.38	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.003	0.72	0.0	0.05	15.68	0.00	2.406	11.27	2.36	5.5	94.5	0.0	-1.45	1.27	0.67	0.61	0.51	21263	2758	5	0	0	0	0	logfile
✔	7U5U	26359	2024-09-28	2022-03-02	3.16	3.37	3.21	3.4	0.007	0.88	0.0	0.06	15.34	0.01	2.279	5.12	0.00	5.5	94.5	0.0	-5.67	0.67	0.77	3.21	3.4	0.003	0.64	0.0	0.04	16.27	0.00	2.544	6.72	1.65	4.1	95.9	0.0	-1.10	0.64	0.69	0.81	2.29	10035	1283	2	0	0	0	0	logfile
✔	8D8R	27255	2024-09-23	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.004	0.78	0.0	0.05	13.44	0.01	2.344	14.13	0.28	7.6	92.4	0.0	-0.69	1.89	0.63	0.67	—	3323	425	4	0	1	0	0	logfile
✔	8A1R	15084	2024-09-25	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.73	1.0	0.05	16.24	0.00	2.545	18.40	1.63	6.6	93.4	0.0	-0.38	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7JG2	22310	2024-09-30	2020-07-18	3.3	3.72	3.32	3.7	0.003	0.71	2.0	0.05	12.46	0.00	2.039	6.67	0.00	11.8	88.1	0.1	-3.98	0.65	0.62	1.57	3.7	0.003	0.67	0.0	0.04	14.43	0.00	2.363	6.14	1.29	5.8	94.2	0.0	-2.03	1.13	0.73	0.78	2.72	24252	1584	13	0	16	0	11858	logfile
✔	7ZDE	14643	2024-09-25	2022-03-29	3.17	3.28	3.06	3.2	0.008	0.78	0.0	0.05	14.80	0.00	2.067	10.89	0.00	2.9	97.1	0.0	-3.00	0.73	0.89	3.55	3.2	0.003	0.62	0.0	0.04	15.51	0.00	2.076	6.71	1.82	2.2	97.8	0.0	1.03	0.40	0.72	0.89	2.24	9014	1159	3	0	2	0	0	logfile
✔	7Yoo	33985	2024-09-25	2022-08-01	3.11	2.28	—	3.2	0.003	0.44	0.0	0.04	13.43	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.55	0.0	0.04	15.17	0.00	2.563	3.93	1.89	3.0	97.0	0.0	0.61	0.93	0.79	0.84	3.19	9188	1169	6	0	0	0	0	logfile
✔	7WP8	32678	2024-09-24	2022-01-23	3.88	4.14	—	4.1	0.008	1.01	2.0	0.11	14.51	0.01	2.250	7.91	0.00	9.0	90.9	0.1	-4.12	0.69	0.80	2.68	4.0	0.003	0.75	0.0	0.05	16.21	0.00	2.523	11.75	2.19	7.1	92.9	0.0	-2.92	2.40	0.70	0.79	2.52	6797	861	9	0	3	0	0	logfile
✔	7LWD	23545	2024-09-24	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	16.27	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	3.9	0.003	0.64	0.0	0.04	16.37	0.00	2.411	9.27	2.33	6.6	93.4	0.0	-1.38	0.43	0.67	0.82	2.14	6163	769	4	0	3	0	0	logfile
✔	8G9W	29880	2024-09-27	2023-02-22	4.66	7.51	4.84	4.7	0.008	1.36	3.0	0.07	19.42	0.01	2.186	11.27	0.00	8.8	91.1	0.1	-4.89	0.86	0.81	—	4.7	0.003	0.74	0.0	0.04	12.48	0.00	2.356	11.03	0.00	6.3	93.7	0.0	-1.86	1.21	0.87	0.84	—	17135	1983	53	0	120	0	0	logfile
✘	6UCV	20729	2024-09-27	2019-09-17	4.1	4.53	—	4.2	0.005	0.94	0.0	0.05	10.41	0.01	2.210	5.32	0.00	2.8	97.2	0.0	-1.87	0.60	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15102	1947	22	0	2	0	0	logfile
✔	7SC0	25007	2024-09-25	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.004	0.61	0.0	0.04	14.06	0.00	2.639	0.73	2.02	9.1	90.1	0.8	-0.76	1.49	0.67	0.82	2.18	11638	1419	11	0	0	0	0	logfile
✔	8iY6	35815	2024-09-23	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.003	0.65	0.0	0.04	14.66	0.00	2.530	9.47	1.77	1.3	98.7	0.0	2.40	0.53	0.42	0.63	1.34	2495	314	2	0	0	0	0	logfile
✔	7Li9	23364	2024-09-24	2021-01-26	3.9	4.05	—	4.0	0.003	0.56	0.0	0.04	13.56	0.00	2.309	6.39	0.00	5.4	94.6	0.0	-3.52	0.64	0.73	1.52	4.0	0.003	0.66	0.0	0.04	15.10	0.00	2.474	7.93	2.80	8.3	91.7	0.0	-0.98	1.33	0.69	0.82	1.64	6174	767	5	0	13	0	0	logfile
✔	8SB2	40288	2024-09-28	2023-04-02	3.5	3.70	3.44	3.6	0.006	1.10	2.0	0.06	16.75	0.01	2.266	3.86	0.00	5.4	94.5	0.2	-2.09	0.74	0.77	2.54	3.6	0.003	0.71	0.0	0.05	14.89	0.00	2.370	6.41	2.63	5.3	94.5	0.2	-1.09	1.17	0.75	0.78	2.16	20186	2478	27	0	82	0	0	logfile
✔	7NPW	12524	2024-09-25	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.76	0.0	0.04	16.33	0.00	2.474	14.41	3.22	3.6	96.4	0.0	0.74	0.59	0.55	0.81	1.65	9723	1278	3	0	0	0	0	logfile
✔	7WRo	32734	2024-09-23	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.004	0.71	0.0	0.05	15.04	0.00	2.402	10.97	4.62	5.4	94.6	0.0	-1.35	0.35	0.59	0.78	2.23	3179	412	3	0	0	0	0	logfile
✔	7Li7	23362	2024-09-24	2021-01-26	4.1	4.15	—	4.2	0.002	0.61	0.0	0.06	12.29	0.00	2.297	10.16	0.00	4.2	95.8	0.0	-2.70	0.52	0.67	—	4.1	0.003	0.66	0.0	0.04	13.59	0.00	2.533	12.50	0.00	5.4	94.6	0.0	-0.91	0.96	0.65	0.76	—	6177	765	5	0	13	0	0	logfile
✔	6oJQ	20092	2024-09-28	2019-04-12	3.67	3.91	—	3.8	0.009	0.78	0.0	0.04	10.58	0.00	2.000	3.54	0.00	4.0	96.0	0.0	-3.02	0.57	0.74	2.96	3.8	0.003	0.54	0.0	0.04	13.38	0.00	1.818	5.42	1.11	4.8	95.2	0.0	-0.50	2.74	0.65	0.82	2.68	18055	1164	5	0	4	0	8878	logfile

• Page 1 of 538
• next →