Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BNZ	16137	2024-09-26	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.71	0.0	0.05	16.34	0.00	2.438	10.33	2.08	5.0	94.9	0.1	-0.65	1.60	0.70	0.73	2.14	14073	1807	6	0	0	0	0	logfile
✔	7oSG	13050	2024-09-26	2021-06-08	3.3	3.90	—	3.5	0.008	1.07	0.0	0.06	14.45	0.01	1.962	4.64	0.97	6.1	93.9	0.0	-5.46	0.81	0.85	2.24	3.6	0.005	0.68	0.0	0.04	15.56	0.00	1.883	7.70	1.79	5.6	94.4	0.0	-0.27	0.56	0.81	0.86	1.43	12831	1666	9	0	3	1	0	logfile
✔	5U1C	8481	2024-09-24	2016-11-28	3.9	4.05	4.05	4.0	0.008	0.91	0.0	0.05	20.21	0.01	1.964	4.76	0.28	6.3	93.7	0.0	-4.03	0.65	0.70	2.74	4.0	0.004	0.69	0.0	0.04	23.49	0.00	1.983	11.83	2.98	2.9	97.1	0.0	-0.21	1.64	0.70	0.80	1.11	8596	846	12	94	4	0	0	logfile
✔	8ALZ	15521	2024-09-27	2022-08-01	3.4	4.20	3.41	3.8	0.003	0.72	0.0	0.04	16.77	0.01	2.204	15.40	0.39	4.5	95.4	0.0	-0.91	0.90	0.78	0.63	3.8	0.003	0.77	0.0	0.05	17.38	0.00	2.452	15.15	2.93	5.4	94.6	0.0	-1.09	0.92	0.91	0.82	0.88	16409	2041	3	0	2	0	0	logfile
✔	7AD1	11719	2024-09-29	2020-09-14	2.92	2.80	—	2.9	0.016	0.99	0.0	0.06	13.73	0.01	2.066	8.76	0.00	7.9	92.1	0.0	-2.10	0.74	0.81	3.51	2.9	0.003	0.59	0.0	0.04	14.64	0.00	2.498	5.12	1.34	3.4	96.6	0.0	0.04	2.56	0.81	0.87	3.13	21376	2830	16	0	30	0	0	logfile
✔	7VAF	31839	2024-09-23	2021-08-29	3.11	3.67	—	3.6	0.002	0.56	0.0	0.04	13.38	0.00	2.264	8.84	0.00	7.3	92.7	0.0	0.32	0.63	0.80	2.23	3.6	0.005	1.19	1.0	0.05	15.75	0.00	2.499	12.29	2.81	7.7	92.3	0.0	0.16	0.49	0.57	0.80	2.42	5625	734	3	0	0	0	0	logfile
✔	7oSF	13049	2024-09-26	2021-06-08	3.8	4.07	—	3.7	0.007	1.11	1.0	0.07	14.29	0.01	1.976	4.06	0.52	6.9	93.0	0.1	-5.56	0.78	0.84	1.68	3.7	0.005	0.75	0.0	0.04	15.43	0.00	1.869	9.06	1.71	6.9	93.1	0.0	-0.42	1.50	0.79	0.86	1.38	12826	1665	9	0	3	1	0	logfile
✔	7FiJ	31599	2024-09-23	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.004	0.80	0.0	0.05	11.52	0.00	2.490	9.16	7.50	11.3	88.7	0.0	-1.47	0.69	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	8G88	29843	2024-09-26	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.004	0.66	0.0	0.04	28.88	0.00	2.084	17.73	0.00	2.3	97.7	0.0	1.40	1.98	0.91	0.80	—	13995	891	11	336	0	0	0	logfile
✔	7RPW	24624	2024-09-25	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.69	0.0	0.04	18.97	0.00	1.102	15.02	0.00	10.4	89.5	0.1	-2.97	3.75	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	8G8B	29845	2024-09-26	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	28.76	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.006	0.74	0.0	0.04	28.79	0.01	2.312	23.02	0.00	2.5	97.5	0.0	0.90	1.94	0.90	0.81	—	14067	902	11	336	0	0	0	logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	7WSi	32759	2024-09-23	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.004	0.79	0.0	0.05	16.03	0.00	2.503	9.96	3.09	8.0	92.0	0.0	-0.20	1.48	0.58	0.79	1.64	5701	743	3	0	0	0	0	logfile
✔	7N6R	24209	2024-09-26	2021-06-08	3.93	4.15	—	4.1	0.015	1.79	0.0	0.08	15.72	0.00	2.264	7.99	1.24	5.1	94.6	0.3	-3.93	0.60	0.75	0.98	4.1	0.006	1.30	4.0	0.07	17.28	0.01	2.040	13.50	4.02	5.0	94.9	0.1	-0.21	1.24	0.70	0.82	1.55	12708	1500	8	0	16	0	0	logfile
✔	5ADX	2856	2024-09-23	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.43	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	15.09	0.00	2.350	9.17	2.37	4.3	95.7	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	28	0	2569	0	0	logfile
✔	7SWQ	25482	2024-09-24	2021-11-21	3.79	4.09	3.83	4.0	0.004	0.74	0.0	0.04	18.24	0.00	1.915	13.13	0.00	10.7	89.3	0.0	-2.38	0.80	0.76	2.70	4.0	0.004	0.72	0.0	0.04	19.52	0.00	1.911	12.91	3.04	8.6	91.4	0.0	-1.85	0.61	0.83	0.82	1.66	6998	791	4	35	1	0	0	logfile
✔	7oSJ	13053	2024-09-26	2021-06-08	3.8	4.19	—	3.8	0.006	1.05	0.0	0.06	14.56	0.01	1.972	4.72	0.89	6.4	93.6	0.1	-5.62	0.77	0.83	1.65	3.9	0.002	0.66	0.0	0.04	15.71	0.00	2.027	8.31	1.42	5.4	94.6	0.0	-0.15	0.61	0.78	0.84	1.24	12853	1673	9	0	3	1	0	logfile
✔	8E78	27937	2024-09-27	2022-08-23	2.77	3.98	2.83	3.3	0.006	0.63	0.0	0.04	14.26	0.00	2.218	11.37	0.00	6.9	93.1	0.0	-3.00	0.68	0.62	3.15	3.4	0.004	0.72	0.0	0.04	15.57	0.00	2.516	10.97	1.44	5.8	94.2	0.0	0.12	1.17	0.90	0.86	2.65	17512	2224	4	0	0	0	0	logfile
✔	6VGK	21197	2024-09-28	2020-01-08	3.1	3.32	—	3.4	0.020	1.84	0.0	0.09	9.91	0.01	2.394	0.31	0.00	3.4	95.8	0.8	-0.29	0.54	0.69	4.26	3.4	0.002	0.59	0.0	0.04	13.90	0.00	2.513	6.52	0.84	3.2	96.7	0.1	1.86	1.23	0.65	0.80	3.15	19222	2513	14	0	0	0	0	logfile
✔	6XM0	22253	2024-09-30	2020-06-29	2.7	2.78	2.66	2.7	0.010	1.12	1.0	0.07	14.51	0.01	2.227	2.21	0.55	8.2	91.5	0.2	-4.26	0.75	0.83	3.71	2.7	0.003	0.65	0.0	0.05	15.19	0.00	2.329	3.78	1.35	5.5	94.5	0.0	-0.66	1.28	0.76	0.85	3.03	25201	3125	20	0	56	0	0	logfile

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