Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ARi	11883	2024-09-25	2020-10-25	3.4	3.64	—	3.6	0.003	0.78	0.0	0.05	13.73	0.00	2.339	3.87	0.68	4.4	95.6	0.0	-5.94	0.64	0.67	0.67	3.6	0.003	0.75	0.0	0.04	16.17	0.00	2.328	7.94	1.85	5.4	94.6	0.0	-1.80	0.88	0.70	0.77	0.43	9538	1246	4	0	0	0	0	logfile
✔	6VJY	21220	2024-09-24	2020-01-18	4.3	4.47	—	4.3	0.003	0.64	0.0	0.04	14.40	0.00	2.223	12.37	0.13	4.1	95.9	0.0	-1.62	0.70	0.81	—	4.3	0.003	0.68	0.0	0.04	14.33	0.00	2.399	8.22	0.13	3.5	96.5	0.0	1.80	1.40	0.69	0.79	—	7266	883	2	0	0	0	0	logfile
✔	6J5A	0670	2024-09-24	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.005	0.88	0.0	0.04	13.04	0.00	2.499	11.08	0.00	8.9	91.1	0.0	-1.76	1.19	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	7YAi	33713	2024-09-24	2022-06-28	3.14	3.36	3.24	3.3	0.004	0.78	0.0	0.05	16.33	0.00	2.075	7.62	0.35	1.8	98.2	0.0	0.56	0.67	0.75	1.64	3.3	0.002	0.58	0.0	0.04	16.28	0.00	2.348	8.78	2.95	1.6	98.4	0.0	1.58	1.03	0.64	0.76	1.56	7678	1001	3	0	2	0	0	logfile
✔	7JZY	22584	2024-09-30	2020-09-02	3.6	3.61	—	3.6	0.009	0.96	0.0	0.05	17.37	0.01	2.236	5.63	0.85	7.0	93.0	0.0	-3.78	0.81	0.85	2.54	3.6	0.003	0.83	1.0	0.04	18.37	0.00	2.068	8.27	2.48	5.3	94.7	0.0	-0.60	0.52	0.81	0.84	1.95	24539	3024	12	61	0	0	0	logfile
✔	6WYK	21967	2024-09-23	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.82	0.0	0.05	16.28	0.00	2.520	12.41	2.76	2.7	97.3	0.0	1.75	0.81	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	6S59	10099	2024-09-26	2019-07-01	3.7	3.82	—	3.7	0.008	1.02	0.0	0.06	11.93	0.01	2.262	3.62	0.63	7.0	93.0	0.0	-4.12	0.80	0.79	2.53	3.7	0.003	0.64	0.0	0.04	14.53	0.00	2.332	6.61	4.28	4.8	95.2	0.0	0.41	0.50	0.79	0.76	1.03	13397	2066	4	0	8	0	0	logfile
✔	7LQ6	23482	2024-09-23	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.004	0.62	0.0	0.04	16.19	0.00	2.503	5.86	1.41	4.2	95.8	0.0	0.02	1.01	0.91	0.88	1.84	5267	672	1	0	0	0	0	logfile
✔	8FA1	28947	2024-09-23	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.51	0.0	0.04	16.11	0.00	2.407	7.17	1.35	0.6	99.4	0.0	4.97	1.17	0.77	0.79	1.42	2553	339	6	0	0	0	0	logfile
✔	7YER	33775	2024-09-26	2022-07-06	3.0	3.14	—	3.2	0.003	0.55	0.0	0.04	13.65	0.00	2.248	4.24	0.13	6.3	93.2	0.4	0.97	0.69	0.82	2.38	3.1	0.003	0.58	0.0	0.04	16.32	0.00	2.479	3.61	1.57	6.0	93.6	0.4	1.03	0.35	0.67	0.83	2.02	14313	1810	6	0	1	0	0	logfile
✔	6D1W	7786	2024-09-26	2018-04-12	3.54	3.85	3.45	3.8	0.007	0.77	0.0	0.04	9.07	0.00	2.014	18.61	0.27	6.5	93.3	0.2	-3.21	0.70	0.73	2.98	3.8	0.004	0.65	0.0	0.04	14.62	0.00	2.491	8.62	2.17	2.6	97.1	0.2	0.62	0.88	0.67	0.78	2.79	14492	1804	8	0	12	0	0	logfile
✔	6JT2	9885	2024-09-24	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.36	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.65	0.00	1.918	8.36	2.95	3.9	96.1	0.0	0.58	1.65	0.82	0.81	1.33	8191	1075	4	0	4	0	0	logfile
✔	5T4D	8354	2024-09-27	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	9.48	0.00	2.026	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	3.1	0.003	0.60	0.0	0.04	15.10	0.00	2.374	6.25	2.31	3.2	96.8	0.0	1.41	1.39	0.78	0.86	2.93	14876	1852	8	0	12	0	0	logfile
✔	5X5B	6705	2024-09-30	2017-02-15	3.7	3.87	—	3.8	0.006	1.13	0.0	0.06	10.42	0.01	2.021	8.73	0.66	12.0	88.0	0.0	-4.94	0.79	0.78	1.59	3.8	0.004	0.76	0.0	0.05	15.05	0.00	2.459	13.67	3.56	9.7	90.3	0.0	-2.30	3.05	0.81	0.78	0.91	24541	3139	3	0	0	0	0	logfile
✔	6WHA	21669	2024-09-24	2020-04-07	3.36	3.16	—	3.4	0.012	1.20	2.0	0.08	13.68	0.01	2.284	6.97	2.99	4.1	95.9	0.0	-0.19	0.78	0.85	2.64	3.3	0.003	0.62	0.0	0.04	15.24	0.00	2.510	2.83	2.34	2.5	97.5	0.0	1.12	0.47	0.77	0.86	2.32	7888	1074	6	0	1	0	0	logfile
✔	7JZX	22583	2024-09-30	2020-09-02	3.4	3.20	—	3.4	0.009	0.92	0.0	0.05	17.05	0.01	2.239	5.33	0.40	7.0	93.0	0.0	-3.94	0.91	0.86	2.98	3.4	0.005	0.61	0.0	0.04	17.64	0.00	2.374	8.06	1.76	6.8	93.2	0.0	-0.81	0.39	0.92	0.87	2.49	23948	2954	11	61	0	0	0	logfile
✔	6U8S	20691	2024-09-29	2019-09-05	3.14	3.91	3.03	3.7	0.012	1.36	0.0	0.07	15.53	0.01	2.257	9.60	9.06	5.1	94.9	0.0	-4.07	0.60	0.79	2.61	3.7	0.004	0.82	0.0	0.05	15.90	0.00	2.523	14.47	5.96	4.2	95.8	0.0	-1.83	0.67	0.60	0.79	2.36	23080	3008	16	0	16	0	0	logfile
✔	6UWF	20922	2024-09-23	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	17.11	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.004	0.64	0.0	0.04	15.52	0.00	2.494	6.57	1.85	2.7	97.3	0.0	1.62	0.31	0.65	0.84	2.21	3178	417	2	0	2	0	0	logfile
✘	6LMU	0920	2024-09-29	2019-12-26	3.4	3.65	3.35	3.7	0.010	1.16	0.0	0.06	16.07	0.01	2.033	5.34	1.50	10.7	89.3	0.0	-5.98	0.66	0.73	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22429	2893	11	0	0	0	0	logfile
✔	6WUH	21913	2024-09-24	2020-05-04	3.4	3.72	—	3.6	0.003	0.67	0.0	0.04	14.69	0.01	2.129	9.08	5.42	12.5	87.5	0.0	-5.07	0.67	0.80	2.01	3.7	0.004	0.76	0.0	0.04	15.85	0.01	2.396	6.70	4.41	12.2	87.8	0.0	-2.63	0.49	0.68	0.81	1.78	7790	1037	3	0	0	0	0	logfile

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