Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✘	2XEA	1730	2024-09-26	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.75	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	3A5X	1641	2024-09-23	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3iZK	5247	2024-09-25	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.004	0.81	0.0	0.05	13.33	0.01	2.379	23.35	0.00	3.7	96.3	0.0	-0.43	2.00	0.82	0.76	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2024-09-25	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.6	0.003	0.80	0.0	0.05	14.01	0.00	2.352	16.10	0.00	2.7	97.1	0.2	-0.63	2.40	0.83	0.69	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	3J1B	5391	2024-09-26	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.85	0.0	0.05	15.00	0.01	2.426	12.93	0.00	4.8	94.4	0.8	0.80	2.24	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2024-09-25	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.87	0.0	0.04	17.83	0.00	2.200	68.15	9.85	17.9	78.3	3.7	-4.25	0.86	0.38	0.72	0.97	9890	1134	8	0	6	0	1086	logfile
✔	3J5P	5778	2024-09-28	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.44	0.00	2.476	13.62	3.55	5.4	94.6	0.0	0.31	1.15	0.73	0.79	0.54	18636	2324	8	0	44	0	0	logfile
✘	3J5Q	5776	2024-09-28	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	12	0	44	0	292	logfile
✔	3J5R	5777	2024-09-27	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.93	0.0	0.04	13.10	0.01	2.267	20.44	0.00	6.6	93.1	0.3	0.01	1.78	0.67	0.52	—	17564	2324	8	0	44	0	0	logfile
✔	3J63	5830	2024-09-25	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	54.83	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	1.02	0.0	0.05	19.10	0.00	2.455	16.34	7.95	1.3	98.7	0.0	-0.75	1.89	0.79	0.77	1.14	10590	1365	15	0	0	0	0	logfile
✔	3J6E	5895	2024-09-26	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.52	0.01	1.539	5.62	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.75	0.0	0.05	14.76	0.01	1.862	17.65	0.03	2.4	97.6	0.0	0.47	2.14	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2024-09-26	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.017	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.76	0.0	0.05	14.91	0.01	1.878	16.77	0.12	3.0	97.0	0.0	0.57	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2024-09-25	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.007	1.34	2.0	0.05	18.01	0.01	2.214	24.42	5.09	2.9	97.0	0.1	0.29	2.58	0.88	0.88	1.93	6344	776	8	0	0	0	0	logfile
✔	3J7A	2660	2024-09-28	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	24.28	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.77	2.0	0.04	22.83	0.01	1.942	14.65	4.57	7.7	91.1	1.1	-1.52	2.47	0.39	0.77	0.98	68866	4106	35	1682	69	0	0	logfile
✔	3J80	2764	2024-09-30	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	0.0	0.04	24.84	0.01	1.724	19.47	6.10	11.3	87.3	1.4	-1.93	1.59	0.78	0.82	0.84	77716	5039	41	1779	70	0	0	logfile
✔	3J89	6123	2024-09-24	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.54	0.0	0.03	20.35	0.01	2.195	6.54	4.51	1.0	99.0	0.0	2.98	1.37	0.81	0.79	0.60	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2024-09-27	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.004	0.81	0.0	0.05	16.73	0.00	1.913	12.28	5.95	6.1	93.4	0.6	-2.09	0.49	0.71	0.83	1.68	15800	1835	12	0	280	0	0	logfile
✔	3J8i	6179	2024-09-27	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.22	0.01	2.124	12.48	0.00	12.3	87.1	0.5	-2.02	1.41	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile

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