Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7DA4	30622	2024-09-23	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.99	0.0	0.04	12.17	0.00	2.587	20.20	0.00	26.7	73.3	0.0	-6.05	3.09	0.41	0.64	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2024-09-25	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.87	0.0	0.04	17.83	0.00	2.200	68.15	9.85	17.9	78.3	3.7	-4.25	0.86	0.38	0.72	0.97	9890	1134	8	0	6	0	1086	logfile
✔	7V49	31704	2024-09-23	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.77	0.0	0.05	15.09	0.00	2.628	11.23	6.50	19.0	81.0	0.0	-5.90	1.12	0.31	0.70	5.14	1221	180	3	0	0	0	0	logfile
✔	7DWV	30887	2024-09-23	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.003	0.68	0.0	0.05	17.47	0.00	2.509	11.08	14.29	17.5	82.5	0.0	-5.79	1.12	0.38	0.71	1.87	2064	258	6	0	0	0	0	logfile
✔	7CYE	30498	2024-09-24	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.004	0.88	0.0	0.05	15.08	0.01	2.477	6.51	3.78	9.6	90.4	0.0	-2.77	0.83	0.60	0.81	2.59	7263	978	3	0	0	0	0	logfile
✔	7BSP	30163	2024-09-25	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	15.68	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	4.0	0.003	0.78	0.0	0.04	16.23	0.00	2.500	11.15	3.07	6.9	93.1	0.0	-2.38	0.62	0.68	0.87	—	11010	1352	5	0	5	0	0	logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	6N1H	8902	2024-09-25	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.004	1.19	1.0	0.05	17.32	0.00	2.040	9.58	1.10	4.8	95.2	0.0	0.41	4.74	0.62	0.84	1.96	10991	1328	16	0	0	0	0	logfile
✔	8GQY	34203	2024-09-25	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.004	0.93	1.0	0.04	15.20	0.00	2.180	6.05	2.99	1.7	98.3	0.0	-0.80	1.06	0.65	0.85	2.06	9515	1265	5	0	0	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	6HQE	0252	2024-09-24	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.005	0.83	0.0	0.04	12.09	0.01	2.495	18.08	0.00	4.4	95.6	0.0	1.46	0.97	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	8W6N	37329	2024-09-24	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.70	0.0	0.04	15.21	0.01	2.345	5.81	2.39	5.9	94.1	0.0	-1.48	0.48	0.66	0.85	2.28	7616	975	4	0	3	0	0	logfile
✔	8iKP	35519	2024-09-23	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.25	2.0	0.13	21.89	0.01	2.252	13.40	11.72	35.6	63.1	1.2	-6.55	2.00	0.32	0.77	3.52	2048	288	32	0	0	0	0	logfile
✔	8W6H	37323	2024-09-24	2023-08-28	3.1	3.21	3.03	3.2	0.011	1.23	1.0	0.07	13.79	0.01	2.205	4.85	0.76	9.5	90.3	0.2	-7.00	0.70	0.85	2.74	3.2	0.003	0.74	0.0	0.04	14.49	0.00	2.225	4.85	2.90	5.5	94.5	0.0	-0.37	0.47	0.69	0.86	1.51	7268	923	4	0	6	0	0	logfile
✔	8W6G	37322	2024-09-24	2023-08-28	3.3	3.59	3.21	3.6	0.008	1.06	2.0	0.06	13.36	0.01	2.313	3.18	0.00	7.3	92.7	0.0	-6.99	0.67	0.89	2.46	3.6	0.003	0.70	0.0	0.04	14.45	0.01	2.620	3.36	1.15	5.8	94.2	0.0	0.78	1.17	0.65	0.88	1.45	8314	1054	4	0	6	0	0	logfile
✔	6GGS	4399	2024-09-24	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.004	1.05	0.0	0.05	17.25	0.00	2.519	18.54	6.96	2.7	97.3	0.0	-3.35	3.51	0.50	0.78	1.84	6880	860	10	0	0	0	0	logfile
✔	8GA0	29883	2024-09-24	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.003	0.66	0.0	0.04	15.84	0.00	2.529	7.19	2.72	3.3	96.7	0.0	-2.00	0.48	0.62	0.76	1.21	6598	882	2	0	0	0	0	logfile
✔	6PVN	20494	2024-09-28	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	4.1	0.004	0.88	0.0	0.05	13.98	0.00	2.469	10.17	0.00	13.9	86.1	0.1	-2.00	0.99	0.69	0.81	—	20874	2576	6	0	2	0	0	logfile
✔	7XQ1	33388	2024-09-23	2022-05-06	3.4	3.32	3.36	3.5	0.010	1.05	1.0	0.06	13.48	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.63	0.0	0.04	14.67	0.00	2.580	6.67	1.74	2.0	98.0	0.0	0.76	1.18	0.50	0.81	2.21	3302	400	2	0	2	0	0	logfile

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