Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYN	26188	2024-09-25	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.05	13.82	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.59	0.0	0.04	15.98	0.00	2.484	4.94	2.75	2.2	97.8	0.0	1.18	0.47	0.67	0.83	3.00	9364	1154	8	0	18	0	0	logfile
✔	8DMB	27533	2024-09-26	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	23.25	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.54	0.0	0.03	23.44	0.01	1.993	1.97	1.48	2.5	97.5	0.0	0.63	0.56	0.69	0.83	4.50	14225	328	5	275	2	0	5728	logfile
✔	7PDG	13337	2024-09-24	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.004	0.76	0.0	0.04	14.77	0.00	2.425	12.24	0.00	4.8	95.2	0.0	-0.11	0.87	0.58	0.73	—	7642	970	2	0	0	0	0	logfile
✔	6VFL	21186	2024-09-27	2020-01-05	4.14	4.24	4.09	4.2	0.020	1.69	0.0	0.10	11.83	0.01	2.247	1.36	0.20	1.4	98.6	0.0	0.90	0.77	0.84	—	4.2	0.003	0.68	0.0	0.05	11.73	0.00	2.422	8.06	0.00	2.8	97.1	0.1	0.50	1.43	0.76	0.84	—	14925	1710	42	0	102	0	0	logfile
✔	8FYF	29572	2024-09-26	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.4	0.003	0.53	0.0	0.04	14.74	0.00	2.433	4.17	1.29	2.2	97.8	0.0	3.48	0.35	0.55	0.85	1.63	13202	830	4	0	0	0	6754	logfile
✔	7SK1	25169	2024-09-23	2021-10-19	3.43	3.92	3.64	4.0	0.009	1.07	0.0	0.06	12.81	0.01	2.254	1.39	0.43	3.8	96.2	0.0	1.09	0.59	0.73	1.99	4.0	0.003	0.70	0.0	0.04	16.20	0.00	2.430	6.61	3.26	4.6	95.4	0.0	1.73	0.58	0.57	0.72	1.24	4291	524	4	0	7	0	0	logfile
✔	7VQ5	32086	2024-09-23	2021-10-19	3.1	3.31	—	3.3	0.009	0.77	0.0	0.05	14.85	0.00	2.110	7.38	0.14	7.4	92.6	0.0	-3.56	0.66	0.84	2.48	3.4	0.002	0.55	0.0	0.04	16.03	0.00	2.534	6.28	1.58	3.3	96.7	0.0	2.64	1.12	0.62	0.82	1.75	6315	800	3	0	1	0	0	logfile
✔	6QQ6	4619	2024-09-26	2019-02-17	3.3	3.40	—	3.4	0.007	1.08	2.0	0.05	16.79	0.01	1.924	5.07	0.00	6.4	93.6	0.0	-5.08	0.67	0.80	2.41	3.4	0.003	0.66	0.0	0.04	15.40	0.00	2.017	6.81	1.12	6.4	93.6	0.0	-0.27	1.33	0.69	0.85	2.07	12123	1486	6	0	13	18	0	logfile
✔	7ToF	26031	2024-09-24	2022-01-24	3.7	3.97	—	4.0	0.003	0.60	0.0	0.04	15.20	0.01	2.163	16.14	0.12	4.4	95.6	0.0	-0.60	0.67	0.64	1.86	4.0	0.003	0.71	0.0	0.05	17.50	0.00	2.495	16.47	2.68	5.1	94.9	0.0	-0.76	0.62	0.69	0.66	0.98	7588	938	2	0	0	0	0	logfile
✔	7L7U	23219	2024-09-27	2020-12-30	3.8	3.94	3.66	3.9	0.023	1.68	3.0	0.15	11.59	0.02	2.411	1.76	0.00	1.4	98.6	0.0	0.66	0.76	0.83	2.40	3.9	0.003	0.67	0.0	0.04	13.54	0.00	2.392	7.28	2.41	1.9	98.1	0.0	0.13	0.77	0.75	0.82	1.78	15258	1761	36	0	96	0	0	logfile
✔	7L7T	23218	2024-09-27	2020-12-30	3.7	4.14	3.63	3.9	0.023	1.69	0.0	0.16	11.04	0.01	2.419	0.30	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.9	0.004	0.64	0.0	0.04	11.94	0.00	2.440	5.72	1.33	3.0	97.0	0.0	1.23	0.75	0.85	0.85	2.40	15423	1770	39	0	102	0	0	logfile
✔	8iWE	35765	2024-09-23	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.7	0.002	0.59	0.0	0.04	15.53	0.00	2.644	2.98	1.42	3.4	96.6	0.0	1.66	1.01	0.62	0.85	2.29	2236	296	2	0	1	0	0	logfile
✔	7VQ4	32085	2024-09-23	2021-10-19	3.2	3.54	—	3.6	0.007	0.74	0.0	0.04	16.10	0.00	2.155	9.59	2.30	6.6	93.4	0.0	-1.96	0.61	0.79	1.10	3.7	0.004	0.71	0.0	0.04	17.48	0.00	2.588	7.63	4.60	3.8	96.2	0.0	2.92	1.26	0.59	0.79	0.31	6306	800	2	0	0	0	0	logfile
✔	6XLY	22252	2024-09-23	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.63	0.0	0.04	15.83	0.00	2.491	7.70	1.56	2.2	97.8	0.0	0.30	0.56	0.88	0.83	1.43	5111	646	2	0	1	0	0	logfile
✔	7SQU	25395	2024-09-28	2021-11-06	2.6	3.28	2.56	3.0	0.010	0.70	0.0	0.05	15.78	0.01	2.259	1.30	1.04	2.5	97.5	0.0	1.39	0.79	0.86	3.71	3.0	0.003	0.59	0.0	0.04	16.17	0.00	2.503	3.51	0.78	1.5	98.5	0.0	1.33	0.67	0.79	0.87	2.74	17856	2292	12	0	0	0	0	logfile
✔	7QLA	14066	2024-09-24	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.9	0.003	0.75	0.0	0.04	16.26	0.00	2.537	12.90	3.66	4.9	95.1	0.0	-0.71	0.52	0.73	0.77	1.64	6837	874	2	0	0	0	0	logfile
✔	7TX7	26156	2024-09-23	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	21.15	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.75	0.0	0.04	13.11	0.00	2.394	10.79	2.28	1.8	98.2	0.0	3.11	1.33	0.46	0.75	1.62	3203	397	2	0	4	0	0	logfile
✔	8DS6	27684	2024-09-25	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.002	0.56	0.0	0.04	11.64	0.01	2.466	5.43	0.00	2.1	97.9	0.0	1.90	1.10	0.85	0.62	—	10135	669	2	0	0	0	5107	logfile
✔	6WRS	21887	2024-09-30	2020-04-30	3.2	2.79	3.14	3.1	0.008	0.92	10.0	0.06	24.02	0.00	2.100	6.48	3.63	7.4	92.6	0.0	-3.55	0.62	0.78	2.86	3.1	0.005	0.80	1.0	0.04	23.54	0.01	2.157	4.34	7.58	7.2	92.8	0.0	-2.84	0.37	0.72	0.84	2.33	81115	2669	28	2809	1	0	0	logfile
✔	7PBW	13307	2024-09-25	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile

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