Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UTJ	20881	2024-09-25	2019-10-29	2.9	3.16	3.00	3.2	0.009	1.34	0.0	0.07	10.47	0.01	2.212	7.86	1.01	5.1	94.7	0.3	-2.93	0.74	0.79	2.56	3.2	0.004	0.73	0.0	0.04	16.96	0.00	2.422	10.63	5.24	3.5	96.4	0.2	0.61	1.52	0.73	0.83	2.93	58359	7546	35	0	0	0	0	logfile
✔	7T90	25749	2024-09-26	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.63	0.0	0.04	15.46	0.00	2.385	6.66	2.42	4.8	95.2	0.0	0.18	0.98	0.70	0.83	2.30	8451	1124	6	0	1	1	0	logfile
✔	7TF3	25860	2024-09-29	2022-01-06	2.25	2.94	—	2.8	0.005	0.82	0.0	0.06	12.94	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.003	0.56	0.0	0.04	14.24	0.00	2.469	4.98	1.14	2.0	98.0	0.0	0.92	1.84	0.79	0.84	3.48	21873	2703	24	0	56	0	0	logfile
✔	7XHT	33198	2024-09-24	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	21.15	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.004	0.57	0.0	0.03	21.62	0.00	2.008	5.10	2.05	1.5	98.5	0.0	0.90	0.35	0.66	0.85	5.08	7839	395	6	220	3	0	0	logfile
✔	7UPT	26675	2024-09-26	2022-04-16	3.5	4.20	3.67	4.0	0.004	0.95	0.0	0.13	19.59	0.00	1.944	10.54	11.28	7.3	92.6	0.1	-3.04	0.80	0.78	1.19	4.0	0.003	0.77	0.0	0.04	19.09	0.00	1.881	10.62	7.54	8.5	91.5	0.0	-0.29	1.38	0.81	0.81	1.17	13567	1692	13	0	21	0	0	logfile
✔	7XK5	33244	2024-09-27	2022-04-19	3.1	3.36	3.15	3.4	0.007	0.95	3.0	0.05	16.03	0.01	2.139	5.84	0.45	3.1	96.8	0.1	-2.20	0.70	0.87	2.78	3.4	0.003	0.56	0.0	0.04	15.95	0.00	2.360	5.53	1.23	2.4	97.6	0.0	0.31	1.30	0.72	0.89	2.67	14834	1894	11	0	11	0	0	logfile
✔	7VFP	31957	2024-09-25	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.16	0.00	2.012	14.33	0.00	5.0	94.9	0.1	0.33	0.57	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	7KRN	23007	2024-09-28	2020-11-20	3.4	3.94	—	3.9	0.008	0.77	0.0	0.15	17.65	0.00	1.546	9.15	7.54	8.6	91.4	0.0	-2.51	0.77	0.82	2.51	3.9	0.003	0.58	0.0	0.04	16.77	0.00	1.952	7.79	4.33	5.0	95.0	0.0	-0.90	0.45	0.78	0.84	1.50	17351	1963	9	80	13	0	0	logfile
✔	7ZEP	14691	2024-09-26	2022-03-31	3.2	3.43	3.22	3.5	0.002	0.48	0.0	0.04	14.25	0.00	2.231	5.23	0.00	1.7	98.3	0.0	0.22	0.71	0.80	3.10	3.4	0.003	0.51	0.0	0.04	15.92	0.00	2.536	5.08	1.69	2.2	97.8	0.0	1.34	1.11	0.72	0.82	2.62	13324	1654	4	0	2	0	0	logfile
✔	7UB6	26436	2024-09-30	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.16	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.002	0.47	0.0	0.04	13.59	0.00	2.561	3.49	0.48	2.2	97.8	0.0	0.53	0.26	0.85	0.86	2.67	24762	3105	10	0	36	0	0	logfile
✔	7YQW	34037	2024-09-30	2022-08-08	3.51	3.86	3.56	3.8	0.004	0.64	0.0	0.05	15.07	0.00	1.820	9.01	0.18	7.7	92.2	0.0	-1.45	0.79	0.84	2.69	3.8	0.004	0.60	0.0	0.04	14.06	0.00	2.543	4.72	2.16	7.3	92.7	0.0	-1.33	1.12	0.79	0.84	2.54	25422	3126	21	0	69	0	0	logfile
✔	7XHA	33192	2024-09-25	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.64	0.0	0.04	15.17	0.00	1.206	7.27	2.22	3.8	96.2	0.0	0.76	0.62	0.72	0.82	1.86	10102	1270	5	0	3	0	0	logfile
✔	8DJK	27460	2024-09-24	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.003	1.34	0.0	0.14	20.85	0.00	2.532	4.92	2.04	3.4	96.6	0.0	1.38	0.51	0.60	0.82	2.27	7091	870	7	0	8	0	0	logfile
✔	7DTE	30852	2024-09-26	2021-01-04	3.0	3.25	—	3.2	0.006	0.61	0.0	0.04	16.80	0.00	1.985	7.83	0.00	5.4	94.5	0.1	-2.94	0.76	0.88	4.23	3.2	0.003	0.55	0.0	0.04	17.65	0.00	2.502	6.29	1.88	3.6	96.4	0.0	0.35	2.07	0.75	0.89	3.82	12130	1374	7	62	2	0	0	logfile
✔	7Y15	33557	2024-09-24	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	8DJM	27461	2024-09-24	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.37	0.0	0.14	21.03	0.00	2.597	4.61	1.37	2.4	97.6	0.0	1.55	0.94	0.60	0.83	2.40	7032	862	7	0	8	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7UL2	26589	2024-09-23	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.54	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.60	0.0	0.04	13.84	0.00	2.273	2.01	2.52	0.6	99.4	0.0	2.54	1.31	0.65	0.84	2.82	2624	347	3	0	2	13	0	logfile
✔	7VDF	31916	2024-09-29	2021-09-06	2.56	3.01	2.63	2.9	0.004	0.55	0.0	0.05	15.73	0.00	1.838	6.95	0.00	4.0	96.0	0.0	-0.05	0.60	0.80	4.50	2.9	0.003	0.54	0.0	0.04	15.70	0.00	2.183	4.76	0.79	4.0	96.0	0.0	-0.50	0.35	0.62	0.82	4.27	22692	1455	6	0	15	0	11043	logfile
✔	7P9V	13267	2024-09-24	2021-07-28	3.4	3.60	3.36	3.5	0.005	0.82	0.0	0.05	15.25	0.01	2.104	15.53	0.00	11.5	88.5	0.0	-2.67	0.62	0.78	1.97	3.5	0.004	0.74	0.0	0.04	15.89	0.00	2.521	10.83	1.67	7.8	92.2	0.0	-0.92	0.97	0.63	0.79	1.66	7286	919	6	0	8	0	0	logfile

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