Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PV8	20488	2024-09-28	2019-07-19	3.87	4.04	3.94	4.0	0.006	1.07	1.0	0.07	14.13	0.01	2.057	5.07	0.69	4.9	95.1	0.0	-2.83	0.70	0.79	2.52	4.0	0.003	0.65	0.0	0.04	14.43	0.00	2.351	6.11	2.94	2.9	97.1	0.0	0.26	1.12	0.71	0.81	1.92	20051	2379	28	0	57	8	0	logfile
✔	6T8H	10401	2024-09-28	2019-10-24	3.77	3.90	3.76	3.8	0.012	1.09	1.0	0.07	11.30	0.01	1.696	39.00	0.94	8.6	91.3	0.1	-3.78	0.81	0.82	2.42	3.8	0.002	0.62	0.0	0.05	16.26	0.00	1.982	48.00	2.27	4.8	95.2	0.0	-0.01	0.97	0.81	0.82	1.63	19398	2346	9	34	5	0	33	logfile
✔	6X3V	22034	2024-09-27	2020-05-21	3.5	3.71	3.49	3.6	0.006	0.65	0.0	0.05	15.05	0.00	2.136	7.47	0.58	4.5	95.5	0.0	-2.83	0.76	0.88	3.52	3.6	0.002	0.56	0.0	0.04	14.85	0.00	2.493	5.68	2.50	2.5	97.5	0.0	0.21	0.40	0.72	0.86	3.33	17426	2121	16	0	27	0	0	logfile
✔	8DU4	27715	2024-09-29	2022-07-26	3.55	3.67	3.48	3.6	0.004	0.69	0.0	0.04	25.34	0.01	2.118	14.07	1.78	4.2	95.8	0.0	-1.95	0.57	0.52	0.73	3.6	0.003	0.62	0.0	0.04	25.78	0.00	2.433	10.37	2.02	5.3	94.7	0.0	-0.85	1.74	0.65	0.64	1.04	17407	1446	13	292	0	0	0	logfile
✔	5BK4	9400	2024-09-26	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.59	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	4.0	0.003	0.81	1.0	0.04	17.21	0.00	2.408	8.22	2.62	8.9	91.1	0.0	-1.39	0.92	0.81	0.80	1.40	62482	7636	22	120	8	0	0	logfile
✔	6QM7	4590	2024-09-24	2019-02-01	2.8	2.94	—	2.9	0.012	1.87	9.0	0.10	18.62	0.01	2.155	5.34	11.11	3.9	95.7	0.3	-2.65	0.80	0.90	3.81	2.9	0.005	0.63	0.0	0.04	18.10	0.00	2.391	8.07	3.36	2.1	97.9	0.1	1.05	1.93	0.76	0.87	3.42	49518	6350	58	0	2	334	0	logfile
✔	7S0F	24789	2024-09-26	2021-08-30	2.96	3.06	—	3.0	0.003	0.45	0.0	0.04	13.98	0.00	1.994	3.24	1.74	2.6	97.3	0.1	-1.72	0.49	0.74	2.57	3.0	0.004	0.54	0.0	0.04	16.52	0.00	2.280	3.74	3.07	3.3	96.6	0.1	0.77	1.30	0.51	0.78	2.32	13885	892	5	0	1	0	6887	logfile
✔	7oN1	12993	2024-09-25	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7ZCU	14633	2024-09-25	2022-03-28	2.7	2.42	2.63	2.6	0.005	0.95	0.0	0.04	14.37	0.01	2.218	3.71	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.003	0.81	0.0	0.04	16.28	0.00	2.503	6.18	1.27	0.5	99.5	0.0	3.56	0.77	0.68	0.86	2.30	10149	958	47	0	42	9	0	logfile
✔	7V4B	31706	2024-09-23	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.006	0.71	0.0	0.05	17.49	0.00	2.542	9.78	6.25	14.3	85.7	0.0	-4.80	0.59	0.41	0.69	2.43	3336	480	6	0	0	0	0	logfile
✔	6LXW	30008	2024-09-26	2020-02-12	3.27	3.40	3.32	3.4	0.015	1.27	0.0	0.07	15.58	0.01	2.241	6.38	1.82	13.2	86.7	0.1	-4.21	0.74	0.81	2.94	3.4	0.004	0.90	1.0	0.05	16.62	0.00	2.284	9.08	4.36	7.8	92.2	0.0	-1.76	0.95	0.73	0.83	2.45	12299	1595	7	0	0	0	0	logfile
✔	7o3V	12709	2024-09-27	2021-04-03	3.7	3.99	3.67	4.0	0.004	0.71	0.0	0.04	14.44	0.00	2.022	11.19	0.00	3.0	97.0	0.0	2.19	0.54	0.75	1.15	4.0	0.003	0.70	0.0	0.04	17.38	0.00	2.394	10.54	3.89	2.2	97.8	0.0	2.85	0.49	0.54	0.75	1.24	15742	2153	10	0	0	0	0	logfile
✔	7D14	30543	2024-09-26	2020-09-13	3.8	3.93	—	3.8	0.006	1.05	0.0	0.06	10.35	0.01	2.291	5.85	0.40	11.4	88.0	0.6	-5.55	0.67	0.81	2.63	3.8	0.003	0.64	0.0	0.04	13.33	0.00	2.213	7.61	2.71	9.2	90.6	0.2	-2.35	1.24	0.67	0.81	1.80	11636	1700	2	0	0	0	0	logfile
✔	7NXD	12637	2024-09-26	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	14.13	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.003	0.78	0.0	0.05	11.37	0.00	1.850	20.00	0.00	5.6	94.4	0.0	-1.06	1.90	0.89	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	7PBU	13303	2024-09-28	2021-08-02	3.3	2.68	—	3.4	0.005	0.82	0.0	0.05	16.55	0.01	2.364	1.82	0.00	1.1	98.9	0.0	0.22	0.60	0.76	2.90	3.3	0.003	0.60	0.0	0.04	20.45	0.00	2.454	3.53	2.59	1.3	98.7	0.0	0.97	1.84	0.61	0.79	1.58	19243	1063	12	68	0	0	9507	logfile
✔	6Si7	10206	2024-09-28	2019-08-08	3.4	3.48	—	3.4	0.004	0.79	0.0	0.05	14.71	0.01	2.267	12.97	0.00	9.2	90.8	0.0	-4.55	0.71	0.77	1.03	3.4	0.003	0.66	0.0	0.04	16.85	0.00	2.413	15.31	3.58	6.3	93.7	0.0	-1.52	0.59	0.75	0.82	1.28	19476	2502	18	0	0	0	0	logfile
✔	6PV7	20487	2024-09-28	2019-07-19	3.34	3.54	3.37	3.5	0.007	1.12	0.0	0.07	13.86	0.01	1.952	5.21	0.64	5.0	95.0	0.0	-2.91	0.75	0.83	3.22	3.5	0.003	0.65	0.0	0.04	14.41	0.00	2.446	5.26	3.40	3.7	96.3	0.0	0.40	1.25	0.74	0.86	2.64	20048	2379	28	0	58	8	0	logfile
✔	6V05	20969	2024-09-26	2019-11-18	4.1	4.20	—	4.1	0.003	0.66	0.0	0.05	13.87	0.00	2.054	9.26	0.75	3.6	96.3	0.1	-2.86	0.70	0.79	—	4.1	0.003	0.68	0.0	0.04	13.52	0.00	2.310	8.11	0.00	5.3	94.7	0.0	-0.51	0.66	0.70	0.78	—	13705	1884	6	0	0	0	0	logfile
✔	7KY6	23069	2024-09-25	2020-12-07	3.1	3.28	—	3.2	0.006	0.70	0.0	0.05	17.71	0.00	2.092	12.79	7.34	6.9	92.9	0.2	-2.79	0.69	0.85	2.99	3.2	0.003	0.59	0.0	0.04	17.65	0.00	2.066	6.84	4.72	4.8	95.2	0.0	0.02	0.34	0.68	0.86	2.65	10729	1322	7	0	10	0	0	logfile
✔	5WC3	8795	2024-09-27	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	3.5	0.003	0.66	0.0	0.05	12.10	0.00	2.303	5.87	1.28	9.0	90.1	0.9	-2.00	0.79	0.77	0.73	1.54	65880	4170	30	0	0	0	33390	logfile

• Page 1 of 536
• next →