Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2024-09-29	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.60	0.0	0.04	14.88	0.00	2.244	1.45	1.82	1.8	98.2	0.0	4.83	0.41	0.69	0.81	8.90	41613	4152	72	0	32	4621	0	logfile
✘	7A6B	11669	2024-09-29	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	8EN7	28269	2024-09-27	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.003	0.62	0.0	0.04	15.47	0.00	2.591	3.15	1.24	1.2	98.8	0.0	4.88	0.39	0.75	0.85	7.98	37614	4128	54	0	6	2544	0	logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	6Z9F	11122	2024-09-29	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.004	0.72	0.0	0.04	15.17	0.01	2.247	3.34	3.02	1.8	98.2	0.0	4.53	0.91	0.84	0.86	8.47	41020	4152	72	0	32	4172	0	logfile
✔	7QK5	14038	2024-09-25	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.571	2.20	3.59	4.2	95.8	0.0	-1.89	1.63	0.36	0.82	7.01	10485	666	18	0	36	0	5337	logfile
✔	7T2G	25612	2024-09-24	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.60	0.0	0.04	14.81	0.00	2.464	9.56	1.57	1.9	98.1	0.0	0.45	0.40	0.80	0.81	4.45	6922	898	5	0	3	8	0	logfile
✔	7VZ4	32220	2024-09-25	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	28.81	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.65	0.0	0.04	27.95	0.00	2.537	4.37	0.97	0.8	99.2	0.0	2.98	0.78	0.77	0.86	7.50	11843	746	10	290	0	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8P6Y	17511	2024-09-23	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.68	0.0	0.04	17.01	0.01	2.160	4.01	1.08	1.3	98.5	0.2	1.72	0.75	0.68	0.85	6.30	5266	630	7	0	3	158	0	logfile
✔	7QKW	14055	2024-09-23	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.41	0.00	2.586	1.91	1.81	5.1	94.9	0.0	-2.80	1.33	0.42	0.85	6.20	4707	306	6	0	0	0	2439	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	7VD9	31911	2024-09-27	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile
✔	8CAN	16531	2024-09-28	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	1.9	0.003	0.56	0.0	0.04	14.12	0.00	1.920	1.06	0.95	1.5	98.5	0.0	1.22	1.90	0.74	0.86	6.50	71225	4104	21	0	27	3170	33930	logfile
✔	7EFC	31083	2024-09-23	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.004	0.77	0.0	0.05	14.45	0.00	2.635	4.29	0.27	4.2	95.8	0.0	-0.32	0.47	0.80	0.85	6.72	4004	480	8	0	4	156	0	logfile
✔	8P6V	17508	2024-09-23	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✔	8ooS	17027	2024-09-26	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.79	0.0	0.04	25.72	0.00	1.061	8.30	1.79	3.1	96.9	0.0	0.87	1.59	0.74	0.74	1.64	12307	966	10	217	3	0	0	logfile
✔	8P79	17522	2024-09-23	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✔	8F0J	28758	2024-09-25	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.57	0.0	0.04	17.13	0.00	2.462	5.32	1.32	2.1	97.9	0.0	1.50	0.84	0.54	0.78	5.45	9678	1157	12	0	18	25	0	logfile

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