Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UiZ	26558	2024-09-29	2022-03-29	3.24	3.45	—	3.4	0.004	0.75	0.0	0.05	13.79	0.00	2.014	2.79	0.00	0.1	99.9	0.0	-1.03	0.60	0.81	2.98	3.4	0.005	0.70	1.0	0.05	16.87	0.00	1.774	7.79	2.36	3.3	96.7	0.0	0.14	0.89	0.61	0.86	3.02	76521	4837	20	0	22	0	38390	logfile
✔	8UXX	42788	2024-09-30	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.003	0.62	0.0	0.04	15.97	0.00	0.978	4.25	1.64	3.3	96.7	0.0	-0.16	2.06	0.72	0.84	2.45	77402	4916	26	0	27	5	38340	logfile
✔	8UXW	42787	2024-09-30	2023-11-11	2.7	2.92	2.78	3.0	0.013	1.92	15.0	0.10	15.35	0.02	1.860	0.28	2.69	3.0	97.0	0.0	-1.20	0.48	0.72	4.73	3.0	0.003	0.61	0.0	0.04	16.70	0.00	1.868	3.16	1.48	2.0	98.0	0.0	0.75	1.11	0.62	0.85	3.86	77359	4916	25	0	20	0	38330	logfile
✔	7UJ0	26559	2024-09-29	2022-03-29	3.26	3.50	—	3.4	0.005	0.83	0.0	0.04	14.41	0.00	2.005	3.09	0.00	0.5	99.5	0.0	-1.04	0.61	0.82	3.29	3.4	0.005	0.64	0.0	0.04	16.83	0.00	1.767	7.44	1.77	3.7	96.3	0.0	-0.04	0.71	0.63	0.86	2.99	76314	4823	20	0	21	0	38308	logfile
✔	7UiX	26556	2024-09-29	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.39	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.90	0.01	1.710	6.90	1.55	3.2	96.8	0.0	0.14	0.80	0.60	0.84	2.92	76307	4820	20	0	23	0	38286	logfile
✔	7UiY	26557	2024-09-29	2022-03-29	3.22	3.19	—	3.2	0.006	0.86	0.0	0.04	14.47	0.00	1.981	3.47	0.00	0.3	99.7	0.0	-0.25	0.60	0.81	3.14	3.2	0.004	0.73	1.0	0.04	16.94	0.00	1.575	7.38	1.45	2.8	97.2	0.0	0.32	0.64	0.61	0.84	3.01	76262	4819	20	0	17	0	38283	logfile
✔	7UiV	26554	2024-09-29	2022-03-29	3.38	3.40	—	3.4	0.004	0.81	0.0	0.05	15.03	0.00	2.004	2.73	0.00	0.3	99.7	0.0	1.05	0.59	0.77	2.52	3.4	0.003	0.60	0.0	0.04	17.35	0.00	1.843	6.66	1.40	2.9	97.1	0.0	0.53	1.23	0.60	0.83	2.50	76152	4805	20	0	18	0	38252	logfile
✔	7UiW	26555	2024-09-29	2022-03-29	3.33	3.27	—	3.3	0.004	0.77	0.0	0.04	14.07	0.00	2.005	2.75	0.02	0.3	99.7	0.0	-0.17	0.59	0.75	2.41	3.3	0.004	0.59	0.0	0.04	16.87	0.00	1.761	7.33	1.83	3.2	96.8	0.0	-0.08	1.20	0.61	0.82	2.32	75891	4792	19	0	17	0	38115	logfile
✔	8P0K	17335	2024-09-29	2023-05-10	2.64	4.40	2.65	2.6	0.006	0.57	0.0	0.04	11.64	0.00	1.901	5.86	0.77	3.8	96.2	0.0	1.08	0.89	0.76	2.35	2.6	0.002	0.54	0.0	0.04	13.23	0.00	1.911	4.29	0.36	3.9	96.1	0.0	0.74	1.19	0.91	0.80	2.32	76143	4537	16	75	5	0	37892	logfile
✔	8oKA	16923	2024-09-29	2023-03-28	3.89	4.39	4.06	3.8	0.003	0.58	0.0	0.04	14.33	0.00	1.942	10.75	0.05	4.0	96.0	0.0	-0.26	0.84	0.79	1.29	3.8	0.003	0.58	0.0	0.04	14.95	0.00	2.360	7.27	0.67	4.7	95.3	0.0	0.03	0.36	0.84	0.79	1.33	74806	4662	12	0	6	0	37750	logfile
✔	7NGL	12315	2024-09-29	2021-02-09	3.8	4.04	—	3.9	0.012	1.50	0.0	0.07	13.27	0.01	2.054	6.08	0.02	9.2	90.8	0.0	-2.53	0.76	0.74	1.38	3.9	0.002	0.61	0.0	0.04	14.39	0.00	2.361	5.40	0.54	3.6	96.4	0.0	-0.52	0.66	0.76	0.71	1.24	74735	4656	12	0	6	0	37715	logfile
✔	7oXo	13102	2024-09-29	2021-06-22	3.9	4.39	—	4.1	0.013	1.34	0.0	0.07	13.05	0.01	1.986	8.38	0.02	9.3	90.7	0.0	-2.64	0.87	0.81	1.07	4.1	0.003	0.61	0.0	0.04	13.98	0.00	2.348	6.39	0.37	3.8	96.2	0.0	-0.40	1.14	0.86	0.79	0.82	74729	4656	12	0	6	0	37715	logfile
✔	8oM7	16970	2024-09-29	2023-03-31	3.74	4.19	4.15	3.8	0.002	0.57	0.0	0.04	15.47	0.00	1.916	10.47	0.02	3.7	96.3	0.0	0.01	0.78	0.73	0.83	3.8	0.003	0.61	0.0	0.04	16.13	0.00	2.372	8.27	1.56	5.5	94.5	0.0	-0.47	0.52	0.78	0.75	0.86	74676	4656	12	0	6	0	37686	logfile
✔	8UBG	42088	2024-09-29	2023-09-22	3.5	3.37	3.70	3.4	0.005	0.74	0.0	0.03	13.10	0.01	2.252	1.64	0.00	0.4	99.6	0.0	-2.55	0.48	0.72	1.79	3.4	0.002	0.47	0.0	0.03	16.13	0.00	2.179	4.67	0.89	1.5	98.5	0.0	5.86	0.86	0.49	0.72	1.19	72500	4520	20	0	0	0	37600	logfile
✔	8E91	27952	2024-09-29	2022-08-26	2.57	3.09	2.63	2.9	0.004	0.65	0.0	0.04	12.11	0.00	2.002	2.68	0.00	0.8	99.2	0.0	-0.18	0.79	0.83	3.53	2.9	0.004	0.65	1.0	0.04	15.26	0.00	1.811	3.98	0.85	3.0	97.0	0.0	1.38	0.74	0.74	0.83	3.10	74842	4783	26	0	9	0	37574	logfile
✔	8E8Q	27946	2024-09-29	2022-08-25	3.12	3.74	3.16	3.5	0.004	0.66	0.0	0.04	13.07	0.00	2.001	2.07	0.00	0.8	99.2	0.0	-0.37	0.81	0.80	2.65	3.5	0.003	0.53	0.0	0.04	15.05	0.00	1.793	3.65	0.47	3.8	96.2	0.0	1.35	0.70	0.83	0.83	2.37	74819	4782	26	0	9	0	37561	logfile
✔	8E7V	27941	2024-09-29	2022-08-24	3.1	3.51	3.13	3.4	0.005	0.74	0.0	0.04	13.57	0.00	2.024	2.15	0.00	0.6	99.4	0.0	-0.52	0.78	0.82	3.17	3.4	0.003	0.51	0.0	0.04	15.33	0.00	1.874	3.09	0.50	3.0	97.0	0.0	1.48	1.42	0.79	0.85	2.67	74798	4779	26	0	9	0	37552	logfile
✔	7NG5	12308	2024-09-29	2021-02-08	3.8	4.19	3.88	4.0	0.013	1.31	0.0	0.07	13.78	0.01	1.977	5.18	0.15	7.6	92.4	0.0	-2.18	0.79	0.80	1.59	4.0	0.004	0.69	1.0	0.04	14.59	0.00	1.746	6.61	0.49	6.0	94.0	0.0	-0.49	0.91	0.79	0.79	1.19	74579	4656	13	0	22	0	37485	logfile
✔	7NG4	12307	2024-09-29	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.48	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.8	0.003	0.60	0.0	0.04	13.09	0.00	1.833	8.71	0.00	5.2	94.8	0.0	-0.70	0.97	0.89	0.80	—	74624	4656	13	0	31	0	37485	logfile
✔	7NFY	12306	2024-09-29	2021-02-08	3.9	4.30	3.98	3.9	0.011	1.27	1.0	0.07	12.81	0.01	2.011	5.76	0.00	8.5	91.5	0.0	-2.41	0.85	0.79	1.54	3.9	0.002	0.56	0.0	0.05	13.95	0.00	1.785	5.98	0.49	3.9	96.1	0.0	-0.30	0.39	0.85	0.78	1.28	74644	4656	13	0	35	0	37485	logfile

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