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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8oJ5 | 16905 | 2024-04-16 | 2023-03-23 | 2.9 | 3.02 | 2.75 | 2.6 | 0.002 | 0.33 | 0.0 | 0.03 | 22.00 | 0.00 | 1.833 | 2.23 | 0.39 | 1.4 | 98.6 | 0.0 | 2.44 | 0.85 | 0.88 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145041 | 8000 | 61 | 3742 | 225 | 0 | 0 | logfile |
✘ | 8BHK | 16058 | 2024-04-13 | 2022-10-31 | 3.3 | 3.34 | 3.25 | 3.4 | 0.002 | 0.36 | 0.0 | 0.04 | 13.09 | 0.01 | 2.195 | 1.28 | 0.20 | 1.7 | 98.3 | 0.0 | 1.80 | 0.68 | 0.78 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27165 | 1680 | 10 | 0 | 10 | 0 | 13415 | logfile |
✘ | 7XL4 | 33272 | 2024-04-12 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2024-04-12 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7TQV | 26073 | 2024-04-09 | 2022-01-27 | 3.43 | 3.72 | — | 3.7 | 0.002 | 0.38 | 0.0 | 0.04 | 10.87 | 0.00 | 2.162 | 5.00 | 0.82 | 3.8 | 96.2 | 0.0 | -0.34 | 0.68 | 0.69 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17792 | 2083 | 8 | 66 | 0 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2024-04-12 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8oJ8 | 16908 | 2024-04-16 | 2023-03-24 | 3.3 | 3.75 | 3.22 | 3.3 | 0.002 | 0.39 | 0.0 | 0.03 | 22.12 | 0.00 | 1.849 | 3.71 | 0.09 | 2.3 | 97.6 | 0.0 | 2.20 | 0.86 | 0.86 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144625 | 7861 | 64 | 3783 | 225 | 0 | 0 | logfile |
✘ | 8CAN | 16531 | 2024-04-10 | 2023-01-24 | 1.93 | 1.75 | 1.93 | 1.9 | 0.002 | 0.40 | 0.0 | 0.04 | 9.00 | 0.00 | 2.041 | 2.66 | 0.16 | 0.9 | 99.1 | 0.0 | 1.63 | 0.70 | 0.81 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71225 | 4104 | 21 | 0 | 27 | 3170 | 33930 | logfile |
✘ | 5GW4 | 9540 | 2024-04-07 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2024-04-16 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-04-05 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-04-08 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7EoR | 31228 | 2024-04-12 | 2021-04-22 | 4.0 | 4.40 | — | 4.1 | 0.002 | 0.44 | 0.0 | 0.04 | 9.48 | 0.00 | 2.227 | 7.42 | 1.64 | 3.2 | 96.8 | 0.0 | 0.66 | 0.86 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24204 | 3030 | 8 | 0 | 16 | 0 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-04-08 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iLR | 35543 | 2024-04-07 | 2023-03-04 | 3.05 | 3.24 | 3.08 | 3.3 | 0.003 | 0.45 | 1.0 | 0.04 | 15.95 | 0.00 | 1.967 | 27.72 | 0.35 | 4.5 | 95.5 | 0.1 | 0.10 | 0.73 | 0.82 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10374 | 1253 | 3 | 0 | 1 | 7 | 0 | logfile |
✘ | 7YDY | 33760 | 2024-04-14 | 2022-07-04 | 4.75 | 4.05 | 4.60 | 4.0 | 0.002 | 0.45 | 0.0 | 0.04 | 10.39 | 0.00 | 2.253 | 5.17 | 0.44 | 3.1 | 96.9 | 0.0 | -3.89 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28760 | 3638 | 14 | 0 | 36 | 0 | 0 | logfile |
✘ | 7R88 | 24311 | 2024-04-07 | 2021-06-26 | 3.5 | 3.76 | — | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 12.49 | 0.00 | 2.274 | 5.35 | 1.02 | 3.5 | 96.5 | 0.0 | -1.50 | 0.69 | 0.85 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10787 | 1368 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ERi | 3941 | 2024-04-16 | 2017-10-18 | 3.0 | 3.06 | 3.00 | 3.0 | 0.003 | 0.45 | 0.0 | 0.03 | 21.56 | 0.00 | 1.251 | 2.51 | 0.00 | 4.3 | 95.7 | 0.0 | -3.80 | 0.66 | 0.74 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145026 | 6178 | 66 | 4401 | 515 | 0 | 0 | logfile |
✘ | 7o4L | 12722 | 2024-04-15 | 2021-04-06 | 3.4 | 3.17 | 3.35 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 14.10 | 0.00 | 2.001 | 4.13 | 0.00 | 2.3 | 97.7 | 0.0 | 2.39 | 0.69 | 0.73 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35159 | 4330 | 25 | 20 | 15 | 0 | 0 | logfile |
✘ | 7oJL | 12955 | 2024-04-08 | 2021-05-16 | 3.3 | 3.67 | 3.30 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 13.04 | 0.00 | 1.827 | 7.40 | 2.98 | 8.2 | 91.8 | 0.1 | -2.78 | 0.86 | 0.82 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12842 | 1498 | 4 | 33 | 1 | 0 | 0 | logfile |