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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6GEN | 4396 | 2024-04-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.64 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-04-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SSJ | 10295 | 2024-04-16 | 2019-09-08 | 2.75 | 3.13 | — | 3.2 | 0.016 | 1.23 | 0.0 | 0.08 | 12.91 | 0.01 | 1.227 | 9.87 | 0.54 | 3.2 | 96.8 | 0.0 | -4.66 | 0.49 | 0.47 | -0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104100 | 13320 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2024-04-16 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.86 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 5LKH | 4068 | 2024-04-16 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZNK | 14804 | 2024-04-13 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.88 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2024-04-10 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-04-07 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8G31 | 29687 | 2024-04-16 | 2023-02-06 | 3.2 | 2.13 | — | 3.3 | 0.006 | 0.95 | 1.0 | 0.05 | 24.19 | 0.01 | 2.203 | 5.22 | 0.76 | 6.2 | 93.8 | 0.1 | -2.51 | 0.49 | 0.38 | 0.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144258 | 5922 | 52 | 4559 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-04-06 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8G34 | 29688 | 2024-04-16 | 2023-02-06 | 3.2 | 2.16 | — | 3.3 | 0.008 | 1.01 | 3.0 | 0.06 | 24.42 | 0.01 | 2.065 | 4.66 | 0.72 | 4.6 | 95.3 | 0.1 | -1.60 | 0.52 | 0.41 | 0.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144256 | 5922 | 52 | 4559 | 0 | 0 | 0 | logfile |
✘ | 7o7R | 12754 | 2024-04-16 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.33 | 8.0 | 0.07 | 16.90 | 0.01 | 1.912 | 20.97 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2024-04-17 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CHH | 30374 | 2024-04-13 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2024-04-10 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 8iES | 35392 | 2024-04-06 | 2023-02-15 | 3.73 | 4.01 | 3.68 | 4.0 | 0.003 | 1.16 | 0.0 | 0.04 | 13.70 | 0.00 | 2.268 | 5.19 | 0.00 | 6.0 | 94.0 | 0.0 | -3.84 | 0.60 | 0.66 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7965 | 1026 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6EU1 | 3956 | 2024-04-16 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 13.02 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✘ | 7Y6G | 33640 | 2024-04-14 | 2022-06-20 | 3.6 | 4.77 | 3.60 | 3.7 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.69 | 0.59 | 0.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |
✘ | 6TB4 | 10438 | 2024-04-16 | 2019-10-31 | 3.8 | 4.42 | 3.85 | 3.8 | 0.008 | 1.08 | 1.0 | 0.06 | 15.27 | 0.01 | 2.044 | 11.25 | 2.05 | 9.8 | 89.5 | 0.8 | -5.38 | 0.70 | 0.55 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40740 | 5275 | 13 | 0 | 76 | 0 | 0 | logfile |
✘ | 7M18 | 23615 | 2024-04-05 | 2021-03-12 | 3.38 | 4.09 | — | 4.1 | 0.007 | 1.37 | 0.0 | 0.17 | 18.71 | 0.01 | 1.728 | 23.77 | 0.28 | 10.4 | 89.3 | 0.3 | -2.48 | 0.74 | 0.73 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54064 | 6904 | 32 | 8 | 16 | 0 | 0 | logfile |