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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 8C02 | 16353 | 2024-04-05 | 2022-12-15 | 4.09 | 4.26 | 4.03 | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 13.16 | 0.01 | 2.225 | 19.86 | 0.44 | 4.1 | 95.9 | 0.0 | 1.51 | 0.58 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4242 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5MGP | 3508 | 2024-04-17 | 2016-11-21 | 3.1 | 3.19 | — | 3.1 | 0.007 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.151 | 3.98 | 0.59 | 9.0 | 90.7 | 0.3 | -4.84 | 0.81 | 0.85 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147155 | 6081 | 56 | 4642 | 0 | 0 | 0 | logfile |
✘ | 6KMW | 0726 | 2024-04-07 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✘ | 7VoT | 32059 | 2024-04-17 | 2021-10-14 | 2.9 | 3.04 | — | 3.0 | 0.006 | 0.80 | 0.0 | 0.04 | 15.28 | 0.01 | 2.147 | 9.03 | 0.37 | 1.5 | 98.5 | 0.0 | 2.64 | 0.76 | 0.82 | 4.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44984 | 4594 | 128 | 0 | 152 | 0 | 0 | logfile |
✘ | 5XTH | 6775 | 2024-04-07 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 8EAF | 27974 | 2024-04-13 | 2022-08-29 | 2.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28500 | 3534 | 18 | 11 | 16 | 15 | 0 | logfile |
✘ | 6VoL | 21268 | 2024-04-16 | 2020-01-30 | 4.06 | 3.45 | — | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 15.39 | 0.01 | 2.148 | 12.59 | 0.12 | 5.2 | 94.7 | 0.1 | -3.18 | 0.74 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38991 | 5165 | 32 | 0 | 7 | 0 | 0 | logfile |
✘ | 7WLM | 32588 | 2024-04-06 | 2022-01-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7308 | 603 | 9 | 0 | 51 | 54 | 0 | logfile |
✘ | 7DR1 | 30821 | 2024-04-11 | 2020-12-25 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22177 | 2114 | 18 | 0 | 108 | 0 | 0 | logfile |
✘ | 7TM0 | 25992 | 2024-04-13 | 2022-01-19 | 3.1 | 3.24 | 3.21 | 3.2 | 0.010 | 1.37 | 0.0 | 0.08 | 8.59 | 0.01 | 2.264 | 1.47 | 0.17 | 2.4 | 97.6 | 0.0 | 0.62 | 0.73 | 0.76 | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27963 | 4401 | 19 | 0 | 52 | 0 | 0 | logfile |
✘ | 6o1N | 0593 | 2024-04-10 | 2019-02-21 | 2.9 | 3.21 | — | 3.8 | 0.011 | 1.37 | 12.0 | 0.07 | 11.02 | 0.01 | 1.856 | 9.13 | 1.51 | 6.4 | 93.1 | 0.5 | -6.01 | 0.60 | 0.73 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19608 | 2448 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KGB | 22865 | 2024-04-16 | 2020-10-16 | 2.7 | 2.99 | 2.72 | 2.8 | 0.007 | 0.66 | 0.0 | 0.05 | 23.04 | 0.01 | 1.846 | 7.37 | 0.02 | 7.2 | 92.6 | 0.2 | -1.01 | 0.91 | 0.91 | 3.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145319 | 5262 | 67 | 4829 | 454 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2024-04-07 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✘ | 7QHo | 13977 | 2024-04-14 | 2021-12-13 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93446 | 5870 | 54 | 0 | 78 | 10 | 44952 | logfile |