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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 8DDQ | 27338 | 2024-04-14 | 2022-06-18 | 2.7 | 2.93 | 2.76 | 2.9 | 0.015 | 0.96 | 0.0 | 0.07 | 12.33 | 0.00 | 2.231 | 4.92 | 1.61 | 3.4 | 96.6 | 0.0 | 0.95 | 0.77 | 0.85 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31842 | 3848 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2024-04-06 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✘ | 7S4H | 24826 | 2024-04-17 | 2021-09-08 | 2.14 | 2.27 | — | 2.3 | 0.009 | 1.03 | 3.0 | 0.05 | 22.83 | 0.00 | 1.502 | 14.45 | 2.83 | 4.8 | 94.9 | 0.2 | 0.71 | 0.77 | 0.85 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22889 | 2577 | 27 | 0 | 63 | 410 | 0 | logfile |
✘ | 6Y5R | 10703 | 2024-04-08 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 12.77 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 7QWQ | 14191 | 2024-04-16 | 2022-01-25 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143809 | 7312 | 59 | 3936 | 158 | 0 | 0 | logfile |
✘ | 7QiY | 14003 | 2024-04-17 | 2021-12-16 | 2.58 | 2.55 | 2.47 | 2.5 | 0.008 | 0.74 | 0.0 | 0.04 | 20.30 | 0.02 | 1.714 | 1.92 | 0.00 | 1.5 | 98.5 | 0.0 | 0.57 | 0.80 | 0.88 | 4.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43805 | 1730 | 31 | 491 | 41 | 225 | 19242 | logfile |
✘ | 8CYi | 27078 | 2024-04-08 | 2022-05-23 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14621 | 932 | 3 | 0 | 2 | 0 | 7191 | logfile |
✘ | 8DZQ | 27805 | 2024-04-06 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7EU3 | 31307 | 2024-04-16 | 2021-05-15 | 3.7 | 3.95 | — | 3.9 | 0.005 | 0.88 | 1.0 | 0.05 | 14.84 | 0.01 | 1.818 | 12.64 | 0.05 | 15.0 | 84.6 | 0.5 | -4.98 | 0.63 | 0.76 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40775 | 5338 | 28 | 0 | 66 | 0 | 0 | logfile |
✘ | 8ENN | 28274 | 2024-04-09 | 2022-09-30 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16749 | 1974 | 12 | 0 | 9 | 858 | 0 | logfile |
✘ | 7RU5 | 24697 | 2024-04-13 | 2021-08-16 | 3.6 | 4.35 | 3.76 | 3.7 | 0.020 | 1.82 | 0.0 | 0.12 | 10.14 | 0.01 | 2.413 | 0.95 | 0.06 | 2.9 | 97.1 | 0.0 | 0.47 | 0.84 | 0.72 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28673 | 3611 | 20 | 0 | 40 | 0 | 0 | logfile |
✘ | 7JSS | 22459 | 2024-04-16 | 2020-08-15 | 3.7 | 4.06 | 4.04 | 3.8 | 0.007 | 0.93 | 0.0 | 0.08 | 22.22 | 0.01 | 2.171 | 15.39 | 0.60 | 12.4 | 86.1 | 1.5 | -4.45 | 0.81 | 0.78 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144890 | 5749 | 54 | 4655 | 0 | 0 | 0 | logfile |
✘ | 7EW6 | 31348 | 2024-04-17 | 2021-05-24 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32973 | 3108 | 27 | 0 | 199 | 0 | 0 | logfile |
✘ | 8JLR | 36405 | 2024-04-06 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8934 | 1130 | 6 | 0 | 1 | 0 | 0 | logfile |