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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JYM | 36726 | 2024-04-12 | 2023-07-03 | 2.79 | 3.39 | 2.76 | 3.2 | 0.004 | 0.55 | 0.0 | 0.05 | 12.78 | 0.00 | 0.546 | 6.93 | 0.00 | 3.6 | 96.4 | 0.0 | 0.19 | 0.83 | 0.85 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24924 | 3099 | 12 | 0 | 48 | 0 | 0 | logfile |
✘ | 8HWE | 35055 | 2024-04-09 | 2022-12-29 | 3.3 | 3.47 | 3.28 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 17.84 | 0.00 | 1.956 | 10.09 | 0.62 | 8.5 | 91.5 | 0.0 | -1.52 | 0.72 | 0.80 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17247 | 2112 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 8JYo | 36728 | 2024-04-17 | 2023-07-03 | 3.2 | 3.48 | 3.07 | 3.2 | 0.005 | 0.60 | 0.0 | 0.05 | 14.11 | 0.00 | 2.061 | 5.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.77 | 0.77 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34233 | 4193 | 23 | 0 | 76 | 0 | 0 | logfile |
✘ | 8FL8 | 29270 | 2024-04-16 | 2022-12-21 | 4.2 | 4.73 | 3.73 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 14.24 | 0.00 | 1.962 | 16.11 | 0.05 | 5.7 | 94.1 | 0.2 | -0.48 | 0.84 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38784 | 5098 | 32 | 0 | 10 | 0 | 0 | logfile |
✘ | 8JP0 | 36465 | 2024-04-05 | 2023-06-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5671 | 719 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8PWL | 17994 | 2024-04-08 | 2023-07-20 | 4.73 | 5.25 | 4.85 | 4.8 | 0.002 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.28 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12266 | 1541 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F39 | 28835 | 2024-04-16 | 2022-11-09 | 3.5 | 4.18 | 3.05 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 15.48 | 0.01 | 1.955 | 14.72 | 0.22 | 5.2 | 94.6 | 0.2 | 0.30 | 0.77 | 0.70 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38767 | 5098 | 32 | 0 | 9 | 0 | 0 | logfile |
✘ | 8HL1 | 34866 | 2024-04-05 | 2022-11-28 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8X43 | 38041 | 2024-04-14 | 2023-11-15 | 3.0 | 3.27 | 3.12 | 3.3 | 0.005 | 0.92 | 0.0 | 0.03 | 17.02 | 0.00 | 1.965 | 12.43 | 0.38 | 3.8 | 96.2 | 0.0 | 2.23 | 0.54 | 0.70 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30164 | 1880 | 12 | 0 | 4 | 0 | 14984 | logfile |
✘ | 8WC7 | 37433 | 2024-04-06 | 2023-09-11 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8532 | 1122 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8C8H | 16476 | 2024-04-16 | 2023-01-20 | 3.84 | 4.03 | 3.97 | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 14.85 | 0.01 | 2.105 | 7.26 | 4.29 | 6.6 | 93.4 | 0.0 | -3.34 | 0.82 | 0.73 | 1.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41296 | 4915 | 27 | 63 | 5 | 61 | 0 | logfile |
✘ | 8i9G | 35270 | 2024-04-06 | 2023-02-06 | 3.2 | 3.67 | 3.09 | 3.6 | 0.005 | 0.67 | 0.0 | 0.05 | 16.41 | 0.00 | 2.213 | 4.97 | 4.97 | 6.6 | 93.4 | 0.0 | -3.28 | 0.72 | 0.83 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6507 | 778 | 9 | 0 | 13 | 0 | 0 | logfile |
✘ | 8Q5H | 18179 | 2024-04-07 | 2023-08-09 | 4.5 | 4.83 | 4.50 | 4.3 | 0.004 | 0.82 | 0.0 | 0.04 | 15.49 | 0.01 | 2.072 | 15.56 | 0.00 | 3.5 | 96.5 | 0.1 | 0.62 | 0.66 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9574 | 1173 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JTY | 36656 | 2024-04-05 | 2023-06-22 | 3.26 | 3.60 | 3.26 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.26 | 0.00 | 2.217 | 4.12 | 0.00 | 5.0 | 95.0 | 0.0 | -0.56 | 0.57 | 0.78 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4274 | 566 | 2 | 0 | 0 | 0 | 0 | logfile |