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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8CBN | 16546 | 2024-04-08 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |
✘ | 8FCN | 28987 | 2024-04-15 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-04-07 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 8i79 | 35212 | 2024-04-12 | 2023-01-31 | 2.8 | 3.87 | 3.00 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 12.36 | 0.00 | 2.195 | 8.33 | 0.00 | 3.0 | 97.0 | 0.0 | 1.30 | 0.88 | 0.84 | 3.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16293 | 2198 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Bi4 | 16076 | 2024-04-17 | 2022-11-01 | 4.3 | 4.52 | 4.39 | 4.5 | 0.004 | 0.97 | 0.0 | 0.05 | 11.50 | 0.01 | 0.452 | 10.80 | 0.14 | 4.0 | 95.6 | 0.3 | -0.49 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145200 | 19404 | 132 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H9U | 34582 | 2024-04-16 | 2022-10-25 | 2.61 | 3.03 | — | 3.0 | 0.006 | 0.71 | 0.0 | 0.04 | 14.86 | 0.01 | 1.921 | 8.72 | 0.05 | 3.0 | 96.9 | 0.1 | -3.00 | 0.72 | 0.83 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38481 | 5026 | 33 | 0 | 10 | 0 | 0 | logfile |
✘ | 8FCo | 28988 | 2024-04-16 | 2022-12-01 | 3.31 | 3.69 | 3.60 | 3.7 | 0.011 | 0.89 | 0.0 | 0.06 | 12.14 | 0.00 | 2.358 | 1.13 | 0.00 | 1.7 | 98.3 | 0.1 | 0.37 | 0.67 | 0.66 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39569 | 4999 | 14 | 0 | 12 | 0 | 0 | logfile |
✘ | 8B6W | 15883 | 2024-04-16 | 2022-09-27 | 2.6 | 2.22 | 2.56 | 2.9 | 0.004 | 0.72 | 0.0 | 0.08 | 11.92 | 0.01 | 1.192 | 10.45 | 0.00 | 4.4 | 95.4 | 0.2 | -0.28 | 0.72 | 0.71 | 3.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145299 | 9534 | 42 | 0 | 21 | 0 | 71274 | logfile |
✘ | 7ZPo | 14859 | 2024-04-09 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✘ | 8SiA | 40504 | 2024-04-12 | 2023-04-14 | 2.91 | 3.13 | 3.00 | 3.1 | 0.013 | 1.24 | 0.0 | 0.09 | 19.00 | 0.01 | 1.993 | 5.03 | 0.72 | 14.5 | 85.0 | 0.5 | -6.42 | 0.61 | 0.69 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 74681 | 4420 | 8 | 0 | 65 | 0 | 36144 | logfile |
✘ | 8BPB | 16148 | 2024-04-06 | 2022-11-16 | 2.8 | 2.48 | 3.00 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 17.77 | 0.00 | 1.755 | 8.92 | 2.96 | 2.5 | 97.5 | 0.0 | 0.64 | 0.74 | 0.80 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8384 | 1030 | 7 | 0 | 6 | 12 | 0 | logfile |
✘ | 8D2S | 27148 | 2024-04-06 | 2022-05-30 | 2.9 | 3.02 | 2.89 | 3.0 | 0.011 | 1.35 | 0.0 | 0.05 | 26.51 | 0.01 | 2.297 | 6.89 | 0.80 | 5.0 | 95.0 | 0.0 | -1.07 | 0.70 | 0.81 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7071 | 879 | 5 | 0 | 21 | 27 | 0 | logfile |
✘ | 8PSJ | 17853 | 2024-04-13 | 2023-07-13 | 3.4 | 3.41 | 3.38 | 3.3 | 0.014 | 1.91 | 0.0 | 0.09 | 14.92 | 0.01 | 2.072 | 5.29 | 0.62 | 7.7 | 92.0 | 0.3 | -3.68 | 0.72 | 0.86 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29695 | 3788 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2024-04-05 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FWC | 29501 | 2024-04-15 | 2023-01-20 | 2.96 | 3.30 | 3.10 | 3.3 | 0.009 | 1.00 | 0.0 | 0.06 | 16.49 | 0.01 | 2.093 | 9.74 | 16.67 | 10.3 | 89.7 | 0.0 | -3.32 | 0.71 | 0.85 | 3.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100740 | 13380 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y6G | 33640 | 2024-04-14 | 2022-06-20 | 3.6 | 4.77 | 3.60 | 3.7 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.69 | 0.59 | 0.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |
✘ | 8HW4 | 35050 | 2024-04-07 | 2022-12-28 | 3.52 | 3.89 | 3.62 | 3.8 | 0.033 | 1.39 | 0.0 | 0.17 | 15.27 | 0.01 | 2.142 | 14.67 | 0.09 | 8.2 | 91.8 | 0.0 | -2.38 | 0.67 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10746 | 1364 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8T6J | 41069 | 2024-04-07 | 2023-06-16 | 3.5 | 3.65 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 2.196 | 6.10 | 0.00 | 5.1 | 94.9 | 0.0 | 0.00 | 0.80 | 0.79 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11652 | 1534 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6K42 | 9912 | 2024-04-06 | 2019-05-23 | 4.1 | 4.04 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.05 | 9.24 | 0.01 | 2.288 | 4.50 | 0.31 | 5.4 | 94.6 | 0.0 | -4.37 | 0.60 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8816 | 1116 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8FWB | 29500 | 2024-04-15 | 2023-01-20 | 3.14 | 3.48 | 3.19 | 3.6 | 0.005 | 0.83 | 0.0 | 0.05 | 15.00 | 0.00 | 2.237 | 11.31 | 2.57 | 12.8 | 87.2 | 0.0 | -3.49 | 0.48 | 0.84 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35256 | 4572 | 12 | 0 | 0 | 0 | 0 | logfile |