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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WTG | 32785 | 2024-04-05 | 2022-02-04 | 3.8 | 3.93 | — | 3.9 | 0.006 | 1.20 | 0.0 | 0.07 | 14.44 | 0.01 | 2.297 | 4.61 | 0.00 | 9.1 | 90.9 | 0.0 | -2.94 | 0.67 | 0.73 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3318 | 425 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K45 | 22660 | 2024-04-05 | 2020-09-14 | 3.7 | 3.90 | 3.76 | 3.9 | 0.014 | 1.42 | 0.0 | 0.08 | 9.35 | 0.01 | 2.568 | 0.35 | 0.00 | 2.2 | 97.8 | 0.0 | 0.92 | 0.79 | 0.78 | 4.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3038 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6EVW | 3961 | 2024-04-16 | 2017-11-02 | 4.4 | 4.34 | — | 4.3 | 0.005 | 0.84 | 0.0 | 0.05 | 11.54 | 0.01 | 2.091 | 6.08 | 0.00 | 5.0 | 95.0 | 0.0 | -4.53 | 0.86 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40536 | 5112 | 24 | 0 | 24 | 0 | 0 | logfile |
✘ | 6PEE | 20315 | 2024-04-16 | 2019-06-20 | 3.42 | 3.27 | — | 3.5 | 0.007 | 0.87 | 0.0 | 0.05 | 13.95 | 0.01 | 2.186 | 3.14 | 0.34 | 5.8 | 94.2 | 0.0 | -3.95 | 0.84 | 0.86 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40440 | 5175 | 30 | 0 | 45 | 0 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-04-05 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 6QUM | 4640 | 2024-04-17 | 2019-02-27 | 3.25 | 3.47 | — | 3.4 | 0.007 | 1.10 | 0.0 | 0.06 | 10.75 | 0.01 | 2.095 | 4.88 | 0.82 | 6.7 | 93.2 | 0.0 | -3.78 | 0.83 | 0.87 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44900 | 5874 | 27 | 0 | 3 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-04-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6V4U | 21048 | 2024-04-06 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7R1D | 14239 | 2024-04-05 | 2022-02-02 | 3.5 | 3.51 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 13.61 | 0.01 | 2.097 | 17.88 | 0.00 | 7.1 | 92.9 | 0.0 | -1.31 | 0.77 | 0.79 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5183 | 653 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8UNY | 42421 | 2024-04-06 | 2023-10-19 | 3.6 | 4.06 | 3.81 | 4.0 | 0.006 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.255 | 7.64 | 0.00 | 1.7 | 98.3 | 0.0 | 1.32 | 0.63 | 0.80 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6546 | 912 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8Uo4 | 42427 | 2024-04-05 | 2023-10-19 | 4.0 | 4.28 | 3.99 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 12.00 | 0.00 | 2.322 | 5.46 | 0.00 | 3.2 | 96.8 | 0.0 | -0.04 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 910 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8UNM | 42409 | 2024-04-05 | 2023-10-19 | 3.4 | 3.77 | 3.54 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 13.95 | 0.00 | 2.208 | 3.37 | 0.00 | 2.5 | 97.5 | 0.0 | 1.00 | 0.64 | 0.86 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6415 | 889 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8FQG | 29387 | 2024-04-06 | 2023-01-06 | 3.01 | 2.41 | 2.83 | 3.0 | 0.015 | 0.73 | 0.0 | 0.06 | 17.67 | 0.00 | 2.233 | 8.45 | 0.22 | 2.3 | 97.7 | 0.0 | -0.50 | 0.62 | 0.85 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8392 | 1064 | 16 | 0 | 4 | 10 | 0 | logfile |
✘ | 8T6R | 41078 | 2024-04-16 | 2023-06-17 | 1.78 | 1.90 | 1.85 | 1.9 | 0.006 | 0.89 | 0.0 | 0.06 | 15.76 | 0.01 | 2.121 | 4.24 | 1.88 | 2.0 | 98.0 | 0.0 | 0.87 | 0.74 | 0.80 | 7.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142800 | 18120 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FQ2 | 29375 | 2024-04-06 | 2023-01-05 | 3.14 | 2.91 | 2.99 | 3.1 | 0.015 | 0.76 | 0.0 | 0.06 | 15.95 | 0.00 | 2.235 | 9.44 | 0.67 | 4.7 | 95.3 | 0.0 | -0.58 | 0.56 | 0.71 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8390 | 1064 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6K9L | 9950 | 2024-04-14 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8G7S | 29822 | 2024-04-16 | 2023-02-16 | 3.1 | 3.84 | 3.12 | 3.3 | 0.007 | 0.63 | 0.0 | 0.04 | 22.60 | 0.02 | 1.438 | 5.30 | 0.02 | 4.1 | 95.8 | 0.0 | -1.21 | 0.83 | 0.76 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145316 | 5551 | 86 | 4703 | 570 | 219 | 0 | logfile |
✘ | 8FQD | 29384 | 2024-04-06 | 2023-01-06 | 3.01 | 2.62 | 3.02 | 3.0 | 0.015 | 0.73 | 0.0 | 0.06 | 17.60 | 0.00 | 2.264 | 6.54 | 0.11 | 3.3 | 96.7 | 0.0 | -0.68 | 0.64 | 0.83 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8384 | 1064 | 14 | 0 | 4 | 2 | 0 | logfile |
✘ | 8GGT | 40020 | 2024-04-05 | 2023-03-08 | 3.5 | 3.61 | 3.44 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.41 | 0.00 | 2.240 | 4.15 | 0.00 | 2.5 | 97.5 | 0.0 | 1.88 | 0.49 | 0.81 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2105 | 281 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7NDC | 12283 | 2024-04-14 | 2021-01-30 | 4.1 | 4.42 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 11.86 | 0.00 | 2.118 | 3.57 | 0.37 | 3.9 | 96.1 | 0.0 | -0.43 | 0.83 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30645 | 3852 | 27 | 0 | 54 | 0 | 0 | logfile |