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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7Y6P | 33645 | 2024-04-14 | 2022-06-21 | 3.3 | 3.20 | 3.21 | 3.3 | 0.005 | 0.66 | 0.0 | 0.04 | 15.54 | 0.00 | 1.892 | 8.44 | 0.00 | 2.3 | 97.7 | 0.0 | 3.78 | 0.77 | 0.89 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31428 | 3772 | 48 | 0 | 60 | 0 | 0 | logfile |
✘ | 8SA5 | 40265 | 2024-04-06 | 2023-03-31 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7649 | 0 | 4 | 345 | 2 | 0 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-04-05 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 8HWG | 35057 | 2024-04-10 | 2022-12-29 | 3.0 | 3.09 | 2.85 | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 18.54 | 0.00 | 1.832 | 7.63 | 4.33 | 6.0 | 93.9 | 0.0 | -1.90 | 0.76 | 0.87 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18110 | 2209 | 13 | 6 | 12 | 0 | 0 | logfile |
✘ | 7PMA | 13526 | 2024-04-07 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 1.0 | 0.05 | 15.93 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 8G7N | 29817 | 2024-04-08 | 2023-02-16 | 2.7 | 2.83 | 2.69 | 2.8 | 0.003 | 0.57 | 0.0 | 0.05 | 13.36 | 0.00 | 2.109 | 2.56 | 0.20 | 1.0 | 99.0 | 0.0 | 1.66 | 0.77 | 0.85 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66108 | 8778 | 42 | 0 | 42 | 0 | 0 | logfile |
✘ | 8T1B | 40958 | 2024-04-11 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23180 | 2576 | 12 | 0 | 52 | 72 | 0 | logfile |
✘ | 8oJ7 | 16907 | 2024-04-08 | 2023-03-24 | 2.46 | 1.79 | — | 2.5 | 0.011 | 1.42 | 1.0 | 0.08 | 18.84 | 0.02 | 1.665 | 4.05 | 0.00 | 3.1 | 96.8 | 0.1 | -1.25 | 0.83 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12026 | 1355 | 5 | 67 | 3 | 0 | 0 | logfile |
✘ | 8GTP | 34261 | 2024-04-14 | 2022-09-08 | 3.1 | 3.47 | 3.25 | 3.4 | 0.009 | 1.09 | 1.0 | 0.08 | 13.84 | 0.01 | 1.912 | 19.57 | 4.36 | 7.8 | 89.5 | 2.7 | -3.18 | 0.69 | 0.71 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30249 | 3768 | 30 | 0 | 69 | 0 | 0 | logfile |
✘ | 8FCA | 28978 | 2024-04-15 | 2022-12-01 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35936 | 2400 | 8 | 0 | 8 | 0 | 17476 | logfile |
✘ | 8FLE | 29276 | 2024-04-16 | 2022-12-21 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144139 | 8150 | 66 | 3646 | 93 | 0 | 0 | logfile |
✘ | 8T1E | 40961 | 2024-04-11 | 2023-06-02 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22115 | 2516 | 12 | 0 | 43 | 36 | 0 | logfile |
✘ | 6XXD | 10647 | 2024-04-09 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2024-04-13 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |