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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PLU | 13502 | 2024-04-11 | 2021-09-01 | 3.2 | 3.11 | 3.17 | 3.0 | 0.005 | 0.85 | 4.0 | 0.05 | 14.78 | 0.01 | 1.314 | 5.25 | 0.04 | 0.1 | 99.9 | 0.0 | -1.57 | 0.89 | 0.82 | 3.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23288 | 2906 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 7PMA | 13526 | 2024-04-07 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 1.0 | 0.05 | 15.93 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PM8 | 13524 | 2024-04-07 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 1.0 | 0.05 | 15.70 | 0.01 | 1.316 | 6.40 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 8iXL | 35795 | 2024-04-07 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XoL | 33351 | 2024-04-05 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J5A | 35984 | 2024-04-14 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✘ | 6C9K | 7437 | 2024-04-16 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.77 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CU8 | 26996 | 2024-04-15 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✘ | 6ZBL | 11157 | 2024-04-16 | 2020-06-08 | 3.6 | 4.39 | 3.70 | 4.0 | 0.014 | 1.20 | 0.0 | 0.07 | 14.69 | 0.01 | 2.400 | 1.54 | 0.00 | 0.7 | 99.3 | 0.0 | -0.56 | 0.87 | 0.79 | 1.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39074 | 2326 | 4 | 0 | 0 | 0 | 19788 | logfile |
✘ | 6VFH | 21172 | 2024-04-16 | 2020-01-05 | 3.86 | 3.96 | 3.81 | 3.9 | 0.019 | 1.39 | 0.0 | 0.08 | 9.31 | 0.01 | 2.497 | 0.82 | 0.00 | 0.8 | 99.2 | 0.0 | 2.06 | 0.75 | 0.80 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36984 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2024-04-11 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2024-04-06 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 8XBX | 38232 | 2024-04-05 | 2023-12-07 | 4.36 | 6.89 | 4.04 | 7.5 | 0.005 | 0.90 | 0.0 | 0.04 | 18.16 | 0.01 | 2.260 | 13.70 | 0.00 | 0.9 | 99.1 | 0.0 | -0.16 | 0.65 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5873 | 663 | 5 | 38 | 0 | 0 | 0 | logfile |
✘ | 8CAN | 16531 | 2024-04-10 | 2023-01-24 | 1.93 | 1.75 | 1.93 | 1.9 | 0.002 | 0.40 | 0.0 | 0.04 | 9.00 | 0.00 | 2.041 | 2.66 | 0.16 | 0.9 | 99.1 | 0.0 | 1.63 | 0.70 | 0.81 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71225 | 4104 | 21 | 0 | 27 | 3170 | 33930 | logfile |
✘ | 7JVA | 22497 | 2024-04-05 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 13.10 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 6XL9 | 22236 | 2024-04-15 | 2020-06-28 | 2.5 | 3.20 | — | 3.1 | 0.008 | 0.90 | 0.0 | 0.06 | 17.12 | 0.01 | 2.025 | 5.93 | 0.00 | 1.0 | 98.9 | 0.0 | -3.38 | 0.71 | 0.81 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35113 | 4137 | 18 | 110 | 8 | 21 | 0 | logfile |
✘ | 8G7N | 29817 | 2024-04-08 | 2023-02-16 | 2.7 | 2.83 | 2.69 | 2.8 | 0.003 | 0.57 | 0.0 | 0.05 | 13.36 | 0.00 | 2.109 | 2.56 | 0.20 | 1.0 | 99.0 | 0.0 | 1.66 | 0.77 | 0.85 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66108 | 8778 | 42 | 0 | 42 | 0 | 0 | logfile |
✘ | 8SGS | 40466 | 2024-04-07 | 2023-04-13 | 3.15 | 3.84 | 3.19 | 3.6 | 0.082 | 3.74 | 0.0 | 0.04 | 15.17 | 0.02 | 1.737 | 12.86 | 1.41 | 1.1 | 98.9 | 0.0 | 1.80 | 0.85 | 0.81 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11720 | 1524 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 6ZH5 | 11214 | 2024-04-15 | 2020-06-21 | 2.7 | 3.69 | — | 3.3 | 0.007 | 0.73 | 0.0 | 0.04 | 18.44 | 0.00 | 2.015 | 8.51 | 12.67 | 1.1 | 98.9 | 0.0 | -2.77 | 0.85 | 0.86 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34408 | 4272 | 35 | 0 | 16 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-04-09 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |