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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7SQ9 | 25380 | 2024-04-09 | 2021-11-04 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15810 | 1876 | 16 | 0 | 18 | 16 | 0 | logfile |
✘ | 7ANW | 11834 | 2024-04-16 | 2020-10-13 | 2.68 | 3.76 | — | 3.2 | 0.010 | 1.98 | 94.0 | 0.20 | 19.40 | 0.01 | 2.288 | 6.97 | 6.45 | 8.3 | 91.7 | 0.0 | -5.69 | 0.94 | 0.93 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40520 | 5160 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 7DXE | 30906 | 2024-04-11 | 2021-01-18 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22280 | 2740 | 8 | 0 | 20 | 0 | 0 | logfile |
✘ | 7M6P | 23703 | 2024-04-08 | 2021-03-26 | 3.28 | 3.97 | 3.27 | 3.8 | 0.008 | 1.27 | 5.0 | 0.08 | 12.69 | 0.01 | 2.293 | 5.19 | 0.00 | 3.1 | 96.9 | 0.0 | 0.26 | 0.78 | 0.79 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14650 | 1800 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 6F0K | 4165 | 2024-04-16 | 2017-11-20 | 3.87 | 3.98 | — | 3.9 | 0.022 | 1.29 | 0.0 | 0.14 | 11.89 | 0.01 | 1.943 | 8.80 | 0.00 | 14.2 | 85.8 | 0.0 | -5.22 | 0.65 | 0.72 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39868 | 2504 | 10 | 0 | 10 | 0 | 19577 | logfile |
✘ | 6UD3 | 20731 | 2024-04-08 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.018 | 1.60 | 0.0 | 0.11 | 12.05 | 0.01 | 2.293 | 7.45 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 8F1K | 28791 | 2024-04-14 | 2022-11-05 | 2.8 | 3.72 | 2.83 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 15.01 | 0.00 | 2.130 | 4.40 | 1.30 | 2.3 | 97.7 | 0.0 | 0.58 | 0.88 | 0.82 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30854 | 3689 | 14 | 95 | 3 | 10 | 0 | logfile |
✘ | 7CZW | 30519 | 2024-04-14 | 2020-09-09 | 2.8 | 2.87 | — | 2.8 | 0.011 | 1.00 | 0.0 | 0.07 | 17.56 | 0.01 | 1.981 | 18.20 | 11.42 | 10.0 | 88.8 | 1.2 | -3.75 | 0.66 | 0.74 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31004 | 3880 | 31 | 0 | 70 | 0 | 0 | logfile |
✘ | 7Y75 | 33652 | 2024-04-12 | 2022-06-21 | 3.1 | 3.35 | 3.04 | 3.3 | 0.008 | 0.80 | 0.0 | 0.05 | 16.44 | 0.00 | 1.927 | 10.11 | 4.43 | 7.1 | 92.7 | 0.2 | -2.95 | 0.75 | 0.86 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25186 | 3042 | 26 | 0 | 46 | 0 | 0 | logfile |
✘ | 6VM0 | 21234 | 2024-04-09 | 2020-01-27 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15355 | 1815 | 15 | 0 | 20 | 0 | 0 | logfile |
✘ | 7EPX | 31249 | 2024-04-14 | 2021-04-28 | 3.0 | 3.08 | — | 3.0 | 0.011 | 1.03 | 0.0 | 0.07 | 17.35 | 0.01 | 1.934 | 19.43 | 10.46 | 10.9 | 86.7 | 2.4 | -3.96 | 0.72 | 0.78 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30846 | 3862 | 33 | 0 | 71 | 0 | 0 | logfile |
✘ | 6M1D | 30041 | 2024-04-11 | 2020-02-25 | 4.5 | 6.53 | — | 4.6 | 0.005 | 1.20 | 0.0 | 0.06 | 18.16 | 0.01 | 2.043 | 20.67 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RJE | 24486 | 2024-04-06 | 2021-07-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57232 | 3818 | 24 | 0 | 10 | 0 | 27924 | logfile |
✘ | 7KiM | 22887 | 2024-04-13 | 2020-10-23 | 3.38 | 4.28 | — | 3.9 | 0.008 | 0.88 | 1.0 | 0.05 | 18.44 | 0.01 | 1.482 | 7.47 | 7.44 | 7.3 | 92.6 | 0.1 | -2.59 | 0.88 | 0.85 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29573 | 3572 | 13 | 90 | 4 | 0 | 0 | logfile |