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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6V4U | 21048 | 2024-04-06 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8UNY | 42421 | 2024-04-06 | 2023-10-19 | 3.6 | 4.06 | 3.81 | 4.0 | 0.006 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.255 | 7.64 | 0.00 | 1.7 | 98.3 | 0.0 | 1.32 | 0.63 | 0.80 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6546 | 912 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8UNM | 42409 | 2024-04-05 | 2023-10-19 | 3.4 | 3.77 | 3.54 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 13.95 | 0.00 | 2.208 | 3.37 | 0.00 | 2.5 | 97.5 | 0.0 | 1.00 | 0.64 | 0.86 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6415 | 889 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8J9V | 36116 | 2024-04-08 | 2023-05-05 | 2.71 | 3.58 | 2.71 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 15.16 | 0.00 | 2.053 | 8.83 | 0.00 | 4.1 | 95.9 | 0.0 | 0.57 | 0.90 | 0.87 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13918 | 1556 | 10 | 60 | 4 | 0 | 0 | logfile |
✘ | 8XBX | 38232 | 2024-04-05 | 2023-12-07 | 4.36 | 6.89 | 4.04 | 7.5 | 0.005 | 0.90 | 0.0 | 0.04 | 18.16 | 0.01 | 2.260 | 13.70 | 0.00 | 0.9 | 99.1 | 0.0 | -0.16 | 0.65 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5873 | 663 | 5 | 38 | 0 | 0 | 0 | logfile |
✘ | 8GED | 29966 | 2024-04-06 | 2023-03-06 | 3.5 | 3.89 | 3.70 | 3.9 | 0.003 | 0.48 | 0.0 | 0.04 | 12.40 | 0.00 | 2.251 | 7.07 | 0.00 | 1.4 | 98.6 | 0.0 | 1.82 | 0.71 | 0.78 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6505 | 946 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8Uo4 | 42427 | 2024-04-05 | 2023-10-19 | 4.0 | 4.28 | 3.99 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 12.00 | 0.00 | 2.322 | 5.46 | 0.00 | 3.2 | 96.8 | 0.0 | -0.04 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 910 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8SWK | 40820 | 2024-04-16 | 2023-05-18 | 4.32 | 4.56 | 4.37 | 4.5 | 0.012 | 1.28 | 0.0 | 0.07 | 12.46 | 0.01 | 2.383 | 1.05 | 0.00 | 3.6 | 95.9 | 0.5 | -0.66 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39510 | 4908 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8UU7 | 42566 | 2024-04-16 | 2023-10-31 | 3.2 | 3.53 | 3.21 | 3.4 | 0.004 | 0.55 | 0.0 | 0.03 | 22.36 | 0.01 | 1.860 | 6.54 | 0.00 | 5.3 | 94.6 | 0.1 | -1.27 | 0.81 | 0.87 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145251 | 5827 | 70 | 4613 | 397 | 15 | 0 | logfile |
✘ | 8GGT | 40020 | 2024-04-05 | 2023-03-08 | 3.5 | 3.61 | 3.44 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.41 | 0.00 | 2.240 | 4.15 | 0.00 | 2.5 | 97.5 | 0.0 | 1.88 | 0.49 | 0.81 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2105 | 281 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8JYo | 36728 | 2024-04-17 | 2023-07-03 | 3.2 | 3.48 | 3.07 | 3.2 | 0.005 | 0.60 | 0.0 | 0.05 | 14.11 | 0.00 | 2.061 | 5.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.77 | 0.77 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34233 | 4193 | 23 | 0 | 76 | 0 | 0 | logfile |
✘ | 8PWL | 17994 | 2024-04-08 | 2023-07-20 | 4.73 | 5.25 | 4.85 | 4.8 | 0.002 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.28 | 0.00 | 2.0 | 98.0 | 0.0 | -0.12 | 0.83 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12266 | 1541 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JYM | 36726 | 2024-04-12 | 2023-07-03 | 2.79 | 3.39 | 2.76 | 3.2 | 0.004 | 0.55 | 0.0 | 0.05 | 12.78 | 0.00 | 0.546 | 6.93 | 0.00 | 3.6 | 96.4 | 0.0 | 0.19 | 0.83 | 0.85 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24924 | 3099 | 12 | 0 | 48 | 0 | 0 | logfile |
✘ | 8QYN | 18759 | 2024-04-13 | 2023-10-26 | 2.88 | 3.46 | 3.04 | 3.3 | 0.004 | 0.50 | 0.0 | 0.04 | 13.48 | 0.00 | 2.265 | 3.18 | 0.00 | 3.4 | 96.6 | 0.0 | 1.04 | 0.80 | 0.88 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29115 | 3731 | 17 | 0 | 22 | 0 | 0 | logfile |
✘ | 8AZ0 | 15728 | 2024-04-05 | 2022-09-05 | 3.4 | 3.10 | 3.36 | 3.6 | 0.006 | 0.74 | 0.0 | 0.05 | 8.05 | 0.01 | 2.611 | 0.94 | 0.00 | 7.7 | 92.3 | 0.0 | -4.46 | 0.50 | 0.87 | 5.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2180 | 280 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 8JTY | 36656 | 2024-04-05 | 2023-06-22 | 3.26 | 3.60 | 3.26 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 16.26 | 0.00 | 2.217 | 4.12 | 0.00 | 5.0 | 95.0 | 0.0 | -0.56 | 0.57 | 0.78 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4274 | 566 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Q5H | 18179 | 2024-04-07 | 2023-08-09 | 4.5 | 4.83 | 4.50 | 4.3 | 0.004 | 0.82 | 0.0 | 0.04 | 15.49 | 0.01 | 2.072 | 15.56 | 0.00 | 3.5 | 96.5 | 0.1 | 0.62 | 0.66 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9574 | 1173 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 8QZ9 | 18773 | 2024-04-12 | 2023-10-26 | 2.95 | 3.51 | 3.11 | 3.3 | 0.003 | 0.48 | 0.0 | 0.04 | 13.37 | 0.00 | 2.202 | 3.64 | 0.00 | 4.1 | 95.9 | 0.0 | 0.82 | 0.79 | 0.87 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24217 | 3213 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 8F6T | 28890 | 2024-04-05 | 2022-11-17 | 2.76 | 3.61 | 2.91 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.87 | 0.00 | 2.119 | 4.79 | 0.00 | 5.4 | 94.6 | 0.0 | 0.80 | 0.65 | 0.86 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3473 | 428 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 7R1D | 14239 | 2024-04-05 | 2022-02-02 | 3.5 | 3.51 | — | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 13.61 | 0.01 | 2.097 | 17.88 | 0.00 | 7.1 | 92.9 | 0.0 | -1.31 | 0.77 | 0.79 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5183 | 653 | 3 | 0 | 0 | 0 | 0 | logfile |