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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 7T6L | 25718 | 2024-04-10 | 2021-12-14 | 3.7 | 4.01 | — | 3.9 | 0.007 | 1.18 | 0.0 | 0.07 | 15.11 | 0.01 | 2.245 | 5.37 | 0.00 | 4.8 | 95.2 | 0.0 | -4.03 | 0.68 | 0.82 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ED8 | 28032 | 2024-04-14 | 2022-09-03 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 8EE6 | 28047 | 2024-04-08 | 2022-09-06 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14475 | 1808 | 5 | 0 | 37 | 0 | 0 | logfile |
✘ | 7V83 | 31788 | 2024-04-16 | 2021-08-22 | 2.8 | 3.28 | — | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 14.99 | 0.00 | 2.147 | 10.09 | 0.00 | 5.7 | 94.3 | 0.0 | -0.33 | 0.76 | 0.79 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40162 | 4902 | 40 | 0 | 89 | 0 | 0 | logfile |
✘ | 6DRA | 7991 | 2024-04-13 | 2018-06-11 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139084 | 8764 | 8 | 0 | 12 | 0 | 69544 | logfile |
✘ | 6PUY | 20484 | 2024-04-07 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 8DDV | 27343 | 2024-04-14 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 6KAC | 9955 | 2024-04-11 | 2019-06-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 6Co7 | 7542 | 2024-04-15 | 2018-03-12 | 3.07 | 3.22 | — | 3.3 | 0.011 | 1.39 | 0.0 | 0.06 | 14.01 | 0.01 | 2.070 | 1.58 | 0.33 | 5.6 | 94.3 | 0.1 | -2.00 | 0.42 | 0.51 | 3.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35255 | 4244 | 12 | 0 | 75 | 0 | 0 | logfile |
✘ | 7UNC | 26620 | 2024-04-05 | 2022-04-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105726 | 7924 | 38 | 311 | 9 | 0 | 48096 | logfile |
✘ | 6L35 | 0821 | 2024-04-15 | 2019-10-09 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34822 | 3260 | 30 | 0 | 205 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2024-04-14 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 6KAD | 9956 | 2024-04-16 | 2019-06-21 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105342 | 9734 | 94 | 0 | 560 | 0 | 0 | logfile |
✘ | 7S6K | 24878 | 2024-04-14 | 2021-09-14 | 3.4 | 3.64 | 3.40 | 3.6 | 0.020 | 1.79 | 0.0 | 0.11 | 9.77 | 0.01 | 2.392 | 0.89 | 0.00 | 3.4 | 96.6 | 0.0 | 0.43 | 0.80 | 0.82 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30903 | 3885 | 24 | 0 | 45 | 0 | 0 | logfile |
✘ | 7Y9S | 33690 | 2024-04-12 | 2022-06-26 | 3.0 | 2.41 | 3.07 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 14.21 | 0.01 | 2.203 | 5.75 | 0.26 | 4.9 | 94.8 | 0.3 | -0.13 | 0.79 | 0.80 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.11 | — | — | — | 2.84 | 25273 | 3126 | 22 | 0 | 53 | 0 | 0 | logfile |
✘ | 7FD8 | 31536 | 2024-04-08 | 2021-07-16 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12152 | 1528 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DDS | 27340 | 2024-04-14 | 2022-06-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |