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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6RRS | 4989 | 2024-04-14 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oJ8 | 16908 | 2024-04-16 | 2023-03-24 | 3.3 | 3.75 | 3.22 | 3.3 | 0.002 | 0.39 | 0.0 | 0.03 | 22.12 | 0.00 | 1.849 | 3.71 | 0.09 | 2.3 | 97.6 | 0.0 | 2.20 | 0.86 | 0.86 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144625 | 7861 | 64 | 3783 | 225 | 0 | 0 | logfile |
✘ | 6V3A | 21031 | 2024-04-15 | 2019-11-25 | 2.82 | 3.02 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 22.75 | 0.02 | 1.898 | 5.96 | 0.07 | 2.8 | 97.2 | 0.1 | -1.23 | 0.82 | 0.82 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142113 | 5457 | 74 | 4615 | 95 | 520 | 0 | logfile |
✘ | 8C95 | 16502 | 2024-04-16 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8TKD | 41347 | 2024-04-16 | 2023-07-25 | 3.7 | 2.74 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 16.64 | 0.00 | 2.042 | 6.60 | 0.26 | 1.8 | 98.2 | 0.0 | 2.98 | 0.70 | 0.74 | 1.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144368 | 8996 | 8 | 0 | 12 | 0 | 72052 | logfile |
✘ | 8X43 | 38041 | 2024-04-14 | 2023-11-15 | 3.0 | 3.27 | 3.12 | 3.3 | 0.005 | 0.92 | 0.0 | 0.03 | 17.02 | 0.00 | 1.965 | 12.43 | 0.38 | 3.8 | 96.2 | 0.0 | 2.23 | 0.54 | 0.70 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30164 | 1880 | 12 | 0 | 4 | 0 | 14984 | logfile |
✘ | 6K3o | 9910 | 2024-04-14 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 7QV1 | 14157 | 2024-04-14 | 2022-01-19 | 3.5 | 3.50 | — | 3.2 | 0.002 | 0.51 | 0.0 | 0.03 | 23.66 | 0.00 | 1.575 | 5.96 | 0.41 | 5.1 | 94.8 | 0.1 | -2.06 | 0.73 | 0.82 | 1.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140774 | 5254 | 53 | 4635 | 24 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2024-04-15 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 8J04 | 35883 | 2024-04-14 | 2023-04-09 | 2.7 | 3.05 | 2.75 | 3.0 | 0.003 | 0.51 | 0.0 | 0.03 | 17.20 | 0.00 | 2.033 | 9.02 | 0.93 | 3.6 | 96.4 | 0.0 | 2.30 | 0.48 | 0.69 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30824 | 1900 | 12 | 0 | 8 | 0 | 15244 | logfile |
✘ | 7SZZ | 25573 | 2024-04-15 | 2021-11-29 | 3.9 | 4.01 | — | 4.0 | 0.007 | 0.62 | 0.0 | 0.03 | 14.38 | 0.00 | 2.505 | 10.59 | 0.00 | 6.5 | 93.5 | 0.0 | -4.42 | 0.72 | 0.86 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143112 | 17085 | 804 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKY | 22229 | 2024-04-16 | 2020-06-27 | 3.2 | 3.13 | 3.17 | 3.2 | 0.006 | 0.55 | 0.0 | 0.03 | 10.04 | 0.00 | 1.588 | 4.66 | 0.48 | 1.5 | 98.5 | 0.0 | 2.67 | 0.52 | 0.87 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38760 | 5420 | 20 | 0 | 0 | 0 | 0 | logfile |
✘ | 8TKE | 41348 | 2024-04-16 | 2023-07-25 | 3.6 | 2.58 | — | 3.5 | 0.002 | 0.46 | 0.0 | 0.03 | 16.85 | 0.00 | 1.947 | 5.36 | 0.13 | 1.4 | 98.6 | 0.0 | 3.69 | 0.71 | 0.73 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144372 | 8996 | 8 | 0 | 16 | 0 | 72052 | logfile |
✘ | 8J00 | 35879 | 2024-04-14 | 2023-04-09 | 3.0 | 3.42 | 3.20 | 3.4 | 0.011 | 0.92 | 0.0 | 0.03 | 19.38 | 0.00 | 1.898 | 10.29 | 0.06 | 2.9 | 97.1 | 0.0 | 2.25 | 0.59 | 0.72 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30184 | 1876 | 12 | 0 | 8 | 0 | 14944 | logfile |
✘ | 7Y6G | 33640 | 2024-04-14 | 2022-06-20 | 3.6 | 4.77 | 3.60 | 3.7 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.69 | 0.59 | 0.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |
✘ | 6ERi | 3941 | 2024-04-16 | 2017-10-18 | 3.0 | 3.06 | 3.00 | 3.0 | 0.003 | 0.45 | 0.0 | 0.03 | 21.56 | 0.00 | 1.251 | 2.51 | 0.00 | 4.3 | 95.7 | 0.0 | -3.80 | 0.66 | 0.74 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145026 | 6178 | 66 | 4401 | 515 | 0 | 0 | logfile |
✘ | 6SiH | 10210 | 2024-04-16 | 2019-08-09 | 4.7 | 5.01 | — | 4.7 | 0.005 | 0.54 | 0.0 | 0.03 | 12.61 | 0.00 | 1.931 | 8.52 | 0.00 | 5.9 | 94.1 | 0.0 | -1.62 | 0.89 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37310 | 4880 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HAJ | 34592 | 2024-04-09 | 2022-10-26 | 4.8 | 4.66 | 4.63 | 3.6 | 0.003 | 0.60 | 0.0 | 0.03 | 24.86 | 0.00 | 2.213 | 11.34 | 0.00 | 2.3 | 97.7 | 0.0 | 1.21 | 0.88 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17214 | 1305 | 11 | 326 | 0 | 0 | 0 | logfile |
✘ | 8Wi7 | 37559 | 2024-04-16 | 2023-09-24 | 3.5 | 3.80 | 3.03 | 3.5 | 0.002 | 0.54 | 0.0 | 0.03 | 24.05 | 0.00 | 1.231 | 10.82 | 0.45 | 3.3 | 96.6 | 0.0 | 0.46 | 0.88 | 0.85 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144808 | 5738 | 51 | 4658 | 0 | 0 | 0 | logfile |
✘ | 8oJ5 | 16905 | 2024-04-16 | 2023-03-23 | 2.9 | 3.02 | 2.75 | 2.6 | 0.002 | 0.33 | 0.0 | 0.03 | 22.00 | 0.00 | 1.833 | 2.23 | 0.39 | 1.4 | 98.6 | 0.0 | 2.44 | 0.85 | 0.88 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145041 | 8000 | 61 | 3742 | 225 | 0 | 0 | logfile |