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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7BST | 30166 | 2024-04-17 | 2020-03-31 | 4.37 | 4.53 | — | 4.3 | 0.004 | 1.03 | 1.0 | 0.06 | 11.11 | 0.01 | 2.232 | 7.20 | 0.56 | 10.3 | 89.7 | 0.0 | -4.41 | 0.86 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28266 | 3508 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6i52 | 4410 | 2024-04-05 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 7YG7 | 33810 | 2024-04-16 | 2022-07-11 | 3.7 | 3.35 | 3.38 | 3.3 | 0.004 | 0.80 | 0.0 | 0.05 | 18.89 | 0.01 | 2.065 | 5.65 | 1.00 | 9.7 | 90.3 | 0.0 | -2.57 | 0.71 | 0.73 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38035 | 4554 | 12 | 99 | 0 | 0 | 0 | logfile |
✘ | 7U6V | 26381 | 2024-04-09 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2024-04-15 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2024-04-07 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Gi1 | 40059 | 2024-04-07 | 2023-03-13 | 3.65 | 3.39 | 3.63 | 3.8 | 0.017 | 1.44 | 12.0 | 0.10 | 11.69 | 0.01 | 1.301 | 10.30 | 0.86 | 4.1 | 95.9 | 0.0 | 1.00 | 0.61 | 0.69 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9704 | 1152 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2024-04-07 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D3S | 30566 | 2024-04-06 | 2020-09-20 | 2.9 | 2.73 | 2.75 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.237 | 10.24 | 0.00 | 4.0 | 96.0 | 0.0 | -2.28 | 0.56 | 0.75 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8338 | 1048 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WTG | 32785 | 2024-04-05 | 2022-02-04 | 3.8 | 3.93 | — | 3.9 | 0.006 | 1.20 | 0.0 | 0.07 | 14.44 | 0.01 | 2.297 | 4.61 | 0.00 | 9.1 | 90.9 | 0.0 | -2.94 | 0.67 | 0.73 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3318 | 425 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2024-04-16 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZNK | 14804 | 2024-04-13 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.88 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✘ | 6KUP | 9579 | 2024-04-08 | 2019-09-02 | 4.3 | 4.37 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.44 | 0.01 | 2.227 | 6.50 | 0.16 | 7.1 | 92.6 | 0.2 | -4.90 | 0.71 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12254 | 1461 | 5 | 23 | 0 | 0 | 0 | logfile |
✘ | 7DBH | 30631 | 2024-04-07 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.57 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-04-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2024-04-10 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BoY | 30136 | 2024-04-16 | 2020-03-20 | 3.8 | 3.79 | — | 3.8 | 0.008 | 1.49 | 0.0 | 0.07 | 12.88 | 0.01 | 1.717 | 15.08 | 1.21 | 16.1 | 82.7 | 1.1 | -5.15 | 0.84 | 0.83 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37794 | 4740 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BGD | 12178 | 2024-04-15 | 2021-01-06 | 3.2 | 3.27 | — | 3.2 | 0.008 | 1.30 | 0.0 | 0.06 | 23.45 | 0.01 | 2.327 | 3.64 | 2.16 | 8.0 | 91.7 | 0.3 | -5.26 | 0.85 | 0.83 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35364 | 1410 | 14 | 1128 | 0 | 0 | 0 | logfile |
✘ | 7DK6 | 30704 | 2024-04-14 | 2020-11-23 | 4.3 | 3.67 | — | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 7.79 | 0.00 | 2.096 | 1.23 | 0.06 | 3.0 | 97.0 | 0.0 | -3.17 | 0.59 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31448 | 4042 | 7 | 0 | 0 | 0 | 0 | logfile |