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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VQ9 | 21345 | 2024-04-16 | 2020-02-04 | 3.6 | 3.93 | — | 3.8 | 0.010 | 0.90 | 0.0 | 0.06 | 11.23 | 0.00 | 1.809 | 1.10 | 0.10 | 2.7 | 97.1 | 0.2 | 0.25 | 0.65 | 0.71 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36114 | 4578 | 17 | 0 | 2 | 0 | 0 | logfile |
✘ | 6oQR | 20167 | 2024-04-16 | 2019-04-29 | 3.1 | 3.49 | — | 3.3 | 0.010 | 0.90 | 3.0 | 0.05 | 14.88 | 0.00 | 1.753 | 4.66 | 2.50 | 3.5 | 96.5 | 0.0 | -2.47 | 0.77 | 0.86 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36951 | 4849 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6VQA | 21346 | 2024-04-16 | 2020-02-04 | 3.7 | 4.02 | — | 3.9 | 0.010 | 0.89 | 0.0 | 0.06 | 10.83 | 0.00 | 2.302 | 1.69 | 0.05 | 2.7 | 97.1 | 0.2 | 0.27 | 0.68 | 0.72 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36114 | 4578 | 17 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WEB | 32445 | 2024-04-14 | 2021-12-23 | 3.7 | 3.99 | — | 3.7 | 0.004 | 0.65 | 1.0 | 0.05 | 16.00 | 0.00 | 2.109 | 11.89 | 0.15 | 5.7 | 94.2 | 0.1 | -1.30 | 0.84 | 0.82 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30413 | 3754 | 30 | 0 | 74 | 0 | 0 | logfile |
✘ | 8iXL | 35795 | 2024-04-07 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oQV | 20171 | 2024-04-16 | 2019-04-29 | 3.3 | 3.60 | — | 3.4 | 0.010 | 0.94 | 1.0 | 0.05 | 14.89 | 0.00 | 1.740 | 5.27 | 2.95 | 4.1 | 95.9 | 0.0 | -2.77 | 0.76 | 0.85 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 8F6E | 28881 | 2024-04-07 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7K3W | 22658 | 2024-04-16 | 2020-09-14 | 1.36 | 1.48 | — | 1.5 | 0.005 | 0.76 | 0.0 | 0.04 | 20.58 | 0.00 | 1.934 | 3.30 | 0.00 | 1.8 | 98.2 | 0.0 | 3.35 | 0.73 | 0.80 | 9.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✘ | 7F62 | 31470 | 2024-04-05 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D59 | 30578 | 2024-04-16 | 2020-09-25 | 3.1 | 3.84 | — | 3.5 | 0.002 | 0.61 | 0.0 | 0.54 | 14.30 | 0.00 | 2.196 | 7.56 | 0.00 | 4.5 | 95.4 | 0.1 | -3.52 | 0.85 | 0.79 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39898 | 5010 | 23 | 0 | 8 | 0 | 0 | logfile |
✘ | 8CY7 | 27069 | 2024-04-06 | 2022-05-23 | 2.9 | 3.84 | 3.06 | 3.3 | 0.003 | 0.76 | 10.0 | 0.17 | 13.02 | 0.00 | 2.018 | 5.28 | 0.26 | 3.7 | 96.1 | 0.1 | 0.96 | 0.83 | 0.76 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54932 | 3513 | 21 | 0 | 74 | 0 | 26549 | logfile |
✘ | 6KNG | 0731 | 2024-04-06 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7NQK | 12528 | 2024-04-05 | 2021-03-01 | 3.5 | 3.75 | 3.51 | 3.6 | 0.005 | 0.84 | 0.0 | 0.05 | 14.92 | 0.00 | 2.035 | 16.48 | 0.90 | 8.6 | 91.4 | 0.0 | -1.81 | 0.58 | 0.82 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6139 | 781 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oQT | 20169 | 2024-04-16 | 2019-04-29 | 3.1 | 3.48 | — | 3.3 | 0.008 | 0.86 | 1.0 | 0.05 | 14.49 | 0.00 | 1.781 | 3.86 | 1.96 | 2.9 | 97.1 | 0.0 | -2.11 | 0.78 | 0.88 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2024-04-08 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DJM | 27461 | 2024-04-06 | 2022-07-01 | 3.23 | 3.66 | 3.31 | 3.6 | 0.029 | 1.53 | 2.0 | 1.04 | 32.65 | 0.00 | 1.844 | 8.23 | 0.82 | 3.7 | 96.3 | 0.0 | -2.26 | 0.49 | 0.75 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7032 | 862 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 8GRX | 34216 | 2024-04-06 | 2022-09-02 | 3.0 | 3.20 | 2.99 | 3.2 | 0.007 | 1.26 | 0.0 | 0.05 | 12.30 | 0.00 | 2.373 | 6.41 | 0.22 | 3.5 | 96.2 | 0.4 | -0.43 | 0.72 | 0.81 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8328 | 1056 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EoS | 28466 | 2024-04-12 | 2022-10-04 | 3.1 | 3.84 | 3.11 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 15.24 | 0.00 | 1.840 | 20.11 | 3.59 | 5.2 | 94.7 | 0.2 | -0.81 | 0.90 | 0.89 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25606 | 3069 | 11 | 87 | 5 | 0 | 0 | logfile |
✘ | 6PQV | 20454 | 2024-04-16 | 2019-07-10 | 3.3 | 3.54 | — | 3.4 | 0.009 | 0.93 | 1.0 | 0.05 | 14.82 | 0.00 | 1.757 | 4.51 | 2.58 | 3.6 | 96.3 | 0.0 | -2.75 | 0.75 | 0.86 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 5oQJ | 3846 | 2024-04-07 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.58 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |