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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2024-04-06 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 7PQH | 13594 | 2024-04-15 | 2021-09-17 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.40 | — | — | 0.79 | 1.6 | 0.004 | 0.75 | 0.0 | 0.04 | 16.47 | 0.00 | 2.086 | 15.28 | 2.18 | 6.7 | 93.3 | 0.0 | -0.42 | — | 0.68 | 0.68 | 0.68 | 102671 | 12832 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y9S | 33690 | 2024-04-12 | 2022-06-26 | 3.0 | 2.41 | 3.07 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 14.21 | 0.01 | 2.203 | 5.75 | 0.26 | 4.9 | 94.8 | 0.3 | -0.13 | 0.79 | 0.80 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.11 | — | — | — | 2.84 | 25273 | 3126 | 22 | 0 | 53 | 0 | 0 | logfile |
✘ | 8B3F | 15826 | 2024-04-14 | 2022-09-16 | 3.1 | 2.81 | 2.76 | 2.8 | 0.011 | 1.69 | 40.0 | 0.10 | 16.15 | 0.01 | 0.542 | 7.35 | 0.08 | 4.4 | 95.6 | 0.0 | -1.26 | 0.68 | 0.70 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.01 | — | — | — | 3.04 | 92036 | 5626 | 26 | 102 | 10 | 0 | 45119 | logfile |
✘ | 8JH3 | 36252 | 2024-04-17 | 2023-05-22 | 3.7 | 3.96 | 3.80 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 19.21 | 0.00 | 1.149 | 8.81 | 0.35 | 3.2 | 96.7 | 0.1 | -0.79 | 0.73 | 0.60 | 1.47 | 3.7 | 0.007 | 0.80 | 0.0 | 0.04 | 20.43 | 0.01 | 1.912 | 16.35 | 1.41 | 5.4 | 94.6 | 0.0 | 0.02 | 0.91 | 0.84 | 0.76 | 1.61 | 43416 | 4655 | 29 | 313 | 9 | 0 | 0 | logfile |
✘ | 7WRF | 32725 | 2024-04-14 | 2022-01-26 | 3.04 | 3.32 | — | 3.3 | 0.008 | 0.99 | 0.0 | 0.06 | 10.46 | 0.01 | 2.294 | 4.47 | 0.12 | 6.2 | 93.8 | 0.0 | -3.74 | 0.71 | 0.81 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.19 | — | — | — | 2.67 | 30469 | 3720 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 6QN1 | 4595 | 2024-04-15 | 2019-02-08 | 3.28 | 3.37 | 3.25 | 3.3 | 0.007 | 0.66 | 0.0 | 0.04 | 14.37 | 0.00 | 1.898 | 4.45 | 0.41 | 4.9 | 95.1 | 0.0 | -2.95 | 0.81 | 0.85 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.20 | — | — | — | 2.01 | 141480 | 19740 | 240 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oQW | 20172 | 2024-04-16 | 2019-04-29 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.30 | — | — | 2.57 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.86 | 0.00 | 1.972 | 8.60 | 2.15 | 3.0 | 97.0 | 0.0 | 0.85 | — | 0.78 | 0.87 | 2.29 | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7oF2 | 12867 | 2024-04-15 | 2021-05-04 | 2.7 | 3.20 | 2.66 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 19.11 | 0.01 | 1.840 | 4.36 | 0.01 | 3.1 | 96.9 | 0.0 | 1.20 | 0.89 | 0.89 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.01 | — | — | — | 3.53 | 101195 | 8560 | 64 | 1466 | 91 | 0 | 0 | logfile |
✘ | 8DR0 | 27667 | 2024-04-17 | 2022-07-20 | 2.42 | 3.22 | 2.49 | 3.0 | 0.008 | 0.56 | 0.0 | 0.04 | 17.94 | 0.00 | 2.058 | 3.70 | 1.04 | 1.4 | 98.6 | 0.0 | 2.09 | 0.87 | 0.85 | 3.77 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 17.94 | 0.00 | 1.919 | 4.56 | 0.91 | 1.9 | 98.1 | 0.0 | 1.83 | 1.78 | 0.80 | 0.86 | 3.73 | 42882 | 2608 | 15 | 41 | 8 | 0 | 21368 | logfile |
✘ | 7UoM | 26650 | 2024-04-16 | 2022-04-13 | 3.8 | 4.15 | 3.96 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 13.35 | 0.00 | 2.256 | 7.12 | 0.09 | 1.5 | 98.5 | 0.0 | 1.04 | 0.84 | 0.87 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.86 | — | — | — | 1.18 | 104640 | 13560 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8T6R | 41078 | 2024-04-16 | 2023-06-17 | 1.78 | 1.90 | 1.85 | 1.9 | 0.006 | 0.89 | 0.0 | 0.06 | 15.76 | 0.01 | 2.121 | 4.24 | 1.88 | 2.0 | 98.0 | 0.0 | 0.87 | 0.74 | 0.80 | 7.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142800 | 18120 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8TET | 41201 | 2024-04-13 | 2023-07-07 | 4.26 | 3.36 | 3.96 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 13.46 | 0.01 | 2.029 | 7.57 | 0.01 | 5.1 | 94.8 | 0.1 | -0.86 | 0.36 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87998 | 11050 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FQG | 29387 | 2024-04-06 | 2023-01-06 | 3.01 | 2.41 | 2.83 | 3.0 | 0.015 | 0.73 | 0.0 | 0.06 | 17.67 | 0.00 | 2.233 | 8.45 | 0.22 | 2.3 | 97.7 | 0.0 | -0.50 | 0.62 | 0.85 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8392 | 1064 | 16 | 0 | 4 | 10 | 0 | logfile |
✘ | 8UNM | 42409 | 2024-04-05 | 2023-10-19 | 3.4 | 3.77 | 3.54 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 13.95 | 0.00 | 2.208 | 3.37 | 0.00 | 2.5 | 97.5 | 0.0 | 1.00 | 0.64 | 0.86 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6415 | 889 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8Uo4 | 42427 | 2024-04-05 | 2023-10-19 | 4.0 | 4.28 | 3.99 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 12.00 | 0.00 | 2.322 | 5.46 | 0.00 | 3.2 | 96.8 | 0.0 | -0.04 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5702 | 910 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8GCE | 29932 | 2024-04-08 | 2023-03-01 | 3.12 | 3.35 | 3.13 | 3.5 | 0.007 | 1.15 | 15.0 | 0.08 | 16.74 | 0.02 | 1.584 | 31.98 | 3.38 | 9.6 | 88.8 | 1.6 | -2.30 | 0.63 | 0.57 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12343 | 1588 | 7 | 0 | 17 | 0 | 0 | logfile |
✘ | 8T6L | 41071 | 2024-04-07 | 2023-06-16 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10988 | 1237 | 6 | 0 | 41 | 1 | 0 | logfile |
✘ | 8UNY | 42421 | 2024-04-06 | 2023-10-19 | 3.6 | 4.06 | 3.81 | 4.0 | 0.006 | 0.97 | 0.0 | 0.06 | 14.64 | 0.01 | 2.255 | 7.64 | 0.00 | 1.7 | 98.3 | 0.0 | 1.32 | 0.63 | 0.80 | 2.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6546 | 912 | 6 | 0 | 2 | 0 | 0 | logfile |