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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7o7Q | 12753 | 2024-04-16 | 2021-04-13 | 3.6 | 4.18 | — | 4.0 | 0.010 | 1.54 | 10.0 | 0.08 | 15.20 | 0.01 | 1.769 | 11.99 | 0.63 | 14.5 | 84.1 | 1.4 | -4.14 | 0.83 | 0.76 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✘ | 7V7N | 31775 | 2024-04-12 | 2021-08-21 | 2.9 | 3.77 | — | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.98 | 0.00 | 2.171 | 6.62 | 0.00 | 5.4 | 94.4 | 0.1 | 0.11 | 0.89 | 0.87 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25430 | 3101 | 42 | 0 | 85 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2024-04-08 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6XEV | 22154 | 2024-04-07 | 2020-06-14 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10545 | 1312 | 8 | 0 | 25 | 0 | 0 | logfile |
✘ | 7XYA | 33515 | 2024-04-12 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 19.12 | 0.00 | 1.962 | 11.59 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 7RE3 | 24432 | 2024-04-17 | 2021-07-12 | 3.33 | 3.71 | — | 3.5 | 0.006 | 1.05 | 6.0 | 0.05 | 17.69 | 0.01 | 2.063 | 10.86 | 6.67 | 6.3 | 93.7 | 0.0 | -1.70 | 0.79 | 0.81 | 1.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.86 | 0.00 | 1.980 | 11.23 | 1.28 | 5.1 | 94.8 | 0.0 | -0.47 | 1.25 | 0.80 | 0.83 | 1.93 | 43154 | 5106 | 22 | 142 | 34 | 0 | 0 | logfile |
✘ | 7SFW | 25104 | 2024-04-16 | 2021-10-04 | 3.2 | 3.27 | 3.18 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 14.96 | 0.01 | 2.133 | 10.14 | 0.05 | 4.4 | 95.6 | 0.0 | -0.35 | 0.68 | 0.85 | 3.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38620 | 4984 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2024-04-11 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.73 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 7FD5 | 31535 | 2024-04-16 | 2021-07-16 | 2.4 | 3.12 | — | 2.9 | 0.015 | 1.23 | 4.0 | 0.07 | 11.59 | 0.01 | 2.203 | 5.63 | 0.51 | 6.3 | 93.5 | 0.2 | -3.77 | 0.71 | 0.72 | 3.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37179 | 4674 | 13 | 0 | 34 | 0 | 0 | logfile |
✘ | 8FHQ | 29099 | 2024-04-06 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7YMi | 33929 | 2024-04-09 | 2022-07-28 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68428 | 6610 | 60 | 0 | 394 | 0 | 0 | logfile |
✘ | 7FiD | 31589 | 2024-04-16 | 2021-07-31 | 2.44 | 3.37 | — | 3.1 | 0.010 | 1.10 | 0.0 | 0.06 | 11.37 | 0.01 | 2.165 | 3.92 | 0.36 | 5.7 | 94.1 | 0.2 | -3.56 | 0.79 | 0.79 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36992 | 4674 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 7BAM | 12124 | 2024-04-14 | 2020-12-16 | 3.5 | 3.66 | — | 3.5 | 0.007 | 0.79 | 0.0 | 0.06 | 13.40 | 0.01 | 1.869 | 24.85 | 0.24 | 5.8 | 94.2 | 0.0 | -1.70 | 0.82 | 0.83 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30612 | 3808 | 12 | 0 | 36 | 0 | 0 | logfile |
✘ | 5LZA | 4121 | 2024-04-17 | 2016-09-29 | 3.6 | 3.69 | 3.73 | 3.6 | 0.008 | 1.15 | 17.0 | 0.07 | 22.91 | 0.02 | 2.102 | 4.03 | 0.47 | 7.8 | 90.1 | 2.1 | -3.44 | 0.74 | 0.86 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 146037 | 5817 | 57 | 4684 | 2 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-04-06 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GY3 | 34369 | 2024-04-07 | 2022-09-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10320 | 1326 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 8FFQ | 29051 | 2024-04-10 | 2022-12-09 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19675 | 2408 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6QG2 | 4545 | 2024-04-16 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.68 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ZGB | 6929 | 2024-04-15 | 2018-03-08 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35011 | 3102 | 31 | 0 | 215 | 0 | 0 | logfile |
✘ | 6SiH | 10210 | 2024-04-16 | 2019-08-09 | 4.7 | 5.01 | — | 4.7 | 0.005 | 0.54 | 0.0 | 0.03 | 12.61 | 0.00 | 1.931 | 8.52 | 0.00 | 5.9 | 94.1 | 0.0 | -1.62 | 0.89 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37310 | 4880 | 10 | 0 | 0 | 0 | 0 | logfile |