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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J5A | 35984 | 2024-04-14 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✘ | 7K3V | 22657 | 2024-04-16 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✘ | 7K3W | 22658 | 2024-04-16 | 2020-09-14 | 1.36 | 1.48 | — | 1.5 | 0.005 | 0.76 | 0.0 | 0.04 | 20.58 | 0.00 | 1.934 | 3.30 | 0.00 | 1.8 | 98.2 | 0.0 | 3.35 | 0.73 | 0.80 | 9.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✘ | 8CGU | 16651 | 2024-04-15 | 2023-02-06 | 1.89 | 1.60 | 1.82 | 1.8 | 0.009 | 1.59 | 1.0 | 0.11 | 22.08 | 0.02 | 1.895 | 0.38 | 0.38 | 2.4 | 97.6 | 0.0 | -0.61 | 0.60 | 0.81 | 6.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35196 | 1266 | 31 | 1078 | 87 | 1871 | 0 | logfile |
✘ | 7YK5 | 33887 | 2024-04-16 | 2022-07-21 | 2.0 | 1.66 | — | 1.9 | 0.014 | 1.49 | 0.0 | 0.09 | 17.33 | 0.00 | 2.157 | 4.91 | 7.75 | 4.0 | 96.0 | 0.0 | -2.45 | 0.38 | 0.48 | 6.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39948 | 5064 | 36 | 0 | 8 | 0 | 0 | logfile |
✘ | 7BiN | 12192 | 2024-04-12 | 2021-01-12 | 3.2 | 1.68 | 3.08 | 3.1 | 0.010 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 1.043 | 16.06 | 0.04 | 9.8 | 90.1 | 0.1 | -0.58 | 0.53 | 0.67 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81721 | 10887 | 56 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CAN | 16531 | 2024-04-10 | 2023-01-24 | 1.93 | 1.75 | 1.93 | 1.9 | 0.002 | 0.40 | 0.0 | 0.04 | 9.00 | 0.00 | 2.041 | 2.66 | 0.16 | 0.9 | 99.1 | 0.0 | 1.63 | 0.70 | 0.81 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71225 | 4104 | 21 | 0 | 27 | 3170 | 33930 | logfile |
✘ | 7EFD | 31084 | 2024-04-05 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 8oJ7 | 16907 | 2024-04-08 | 2023-03-24 | 2.46 | 1.79 | — | 2.5 | 0.011 | 1.42 | 1.0 | 0.08 | 18.84 | 0.02 | 1.665 | 4.05 | 0.00 | 3.1 | 96.8 | 0.1 | -1.25 | 0.83 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12026 | 1355 | 5 | 67 | 3 | 0 | 0 | logfile |
✘ | 8G6Y | 29788 | 2024-04-14 | 2023-02-16 | 2.09 | 1.85 | 2.01 | 1.9 | 0.007 | 0.87 | 0.0 | 0.05 | 23.23 | 0.02 | 1.446 | 5.72 | 3.72 | 3.5 | 96.3 | 0.2 | -1.60 | 0.73 | 0.86 | 6.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93683 | 3175 | 69 | 3037 | 250 | 3460 | 0 | logfile |
✘ | 8P76 | 17519 | 2024-04-05 | 2023-05-30 | 2.0 | 1.89 | 2.02 | 2.0 | 0.006 | 0.63 | 0.0 | 0.04 | 17.10 | 0.00 | 2.258 | 6.57 | 0.90 | 1.3 | 98.5 | 0.2 | 1.97 | 0.66 | 0.79 | 5.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5261 | 630 | 7 | 0 | 2 | 151 | 0 | logfile |
✘ | 8T6R | 41078 | 2024-04-16 | 2023-06-17 | 1.78 | 1.90 | 1.85 | 1.9 | 0.006 | 0.89 | 0.0 | 0.06 | 15.76 | 0.01 | 2.121 | 4.24 | 1.88 | 2.0 | 98.0 | 0.0 | 0.87 | 0.74 | 0.80 | 7.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142800 | 18120 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-04-06 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8G6X | 29787 | 2024-04-14 | 2023-02-16 | 2.31 | 1.96 | 2.20 | 2.0 | 0.011 | 0.97 | 0.0 | 0.06 | 23.48 | 0.02 | 1.474 | 7.58 | 5.85 | 4.1 | 95.8 | 0.2 | -2.02 | 0.68 | 0.83 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93873 | 3177 | 72 | 3037 | 252 | 3462 | 0 | logfile |
✘ | 7TU5 | 26126 | 2024-04-16 | 2022-02-02 | 2.1 | 1.97 | 2.06 | 1.8 | 0.009 | 0.85 | 6.0 | 0.06 | 15.88 | 0.01 | 1.910 | 4.33 | 1.54 | 1.4 | 98.6 | 0.0 | 0.64 | 0.84 | 0.82 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19656 | 2574 | 18 | 0 | 6 | 6 | 0 | logfile |
✘ | 7TJQ | 25929 | 2024-04-14 | 2022-01-16 | 3.13 | 2.03 | — | 2.0 | 0.004 | 0.77 | 0.0 | 0.05 | 13.28 | 0.01 | 2.288 | 1.08 | 1.03 | 4.5 | 95.5 | 0.0 | -0.55 | 0.75 | 0.75 | 3.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20538 | 2679 | 21 | 0 | 12 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-04-07 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-04-05 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7JSX | 22462 | 2024-04-16 | 2020-08-16 | 2.06 | 2.05 | — | 2.1 | 0.022 | 1.67 | 2.0 | 0.11 | 11.97 | 0.01 | 2.201 | 6.77 | 1.26 | 3.9 | 96.1 | 0.0 | -1.03 | 0.74 | 0.76 | 5.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38813 | 4832 | 40 | 0 | 0 | 1141 | 0 | logfile |
✘ | 8P2S | 17373 | 2024-04-07 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |