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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6MiX | 9132 | 2024-04-17 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5X1G | 6701 | 2024-04-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 5NV3 | 3699 | 2024-04-16 | 2017-05-03 | 3.39 | 3.43 | — | 3.4 | 0.007 | 1.22 | 2.0 | 0.07 | 14.59 | 0.00 | 2.164 | 2.84 | 0.94 | 5.6 | 94.2 | 0.2 | -2.82 | 0.09 | 0.16 | 3.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37816 | 4768 | 24 | 0 | 16 | 0 | 0 | logfile |
✘ | 7CHH | 30374 | 2024-04-13 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.26 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✘ | 6Qi8 | 4552 | 2024-04-08 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2024-04-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6EU1 | 3956 | 2024-04-16 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 13.02 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2024-04-10 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-04-06 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6M99 | 9050 | 2024-04-15 | 2018-08-23 | 3.4 | 3.37 | — | 3.3 | 0.007 | 0.97 | 0.0 | 0.06 | 10.05 | 0.01 | 2.186 | 6.88 | 0.38 | 5.8 | 94.2 | 0.0 | -4.38 | 0.27 | 0.85 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101389 | 13152 | 14 | 0 | 2 | 0 | 0 | logfile |
✘ | 7TLD | 25988 | 2024-04-11 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8TET | 41201 | 2024-04-13 | 2023-07-07 | 4.26 | 3.36 | 3.96 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 13.46 | 0.01 | 2.029 | 7.57 | 0.01 | 5.1 | 94.8 | 0.1 | -0.86 | 0.36 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 87998 | 11050 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6H05 | 0108 | 2024-04-17 | 2018-07-06 | 2.9 | 3.15 | — | 3.5 | 0.016 | 1.09 | 0.0 | 0.07 | 9.74 | 0.01 | 0.426 | 17.80 | 0.00 | 8.5 | 91.5 | 0.0 | -5.50 | 0.36 | 0.13 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44544 | 5664 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-04-06 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-04-07 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2024-04-13 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2024-04-10 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 23.46 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5LKH | 4068 | 2024-04-16 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2024-04-11 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.48 | 8.0 | 0.12 | 16.09 | 0.01 | 1.877 | 25.96 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 7YK5 | 33887 | 2024-04-16 | 2022-07-21 | 2.0 | 1.66 | — | 1.9 | 0.014 | 1.49 | 0.0 | 0.09 | 17.33 | 0.00 | 2.157 | 4.91 | 7.75 | 4.0 | 96.0 | 0.0 | -2.45 | 0.38 | 0.48 | 6.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39948 | 5064 | 36 | 0 | 8 | 0 | 0 | logfile |