Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H10	34420	2024-09-30	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.90	0.0	0.05	12.96	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.004	0.61	0.0	0.05	14.26	0.00	2.490	3.73	2.25	3.5	96.5	0.0	-0.15	0.43	0.82	0.87	3.05	24882	3078	9	0	54	0	0	logfile
✔	7DWZ	30890	2024-09-30	2021-01-18	3.3	3.37	—	3.3	0.012	1.03	0.0	0.09	17.98	0.01	1.909	25.24	12.63	10.2	86.4	3.5	-4.12	0.70	0.75	1.84	3.3	0.003	0.70	0.0	0.05	16.02	0.00	2.387	5.67	3.06	6.1	93.7	0.3	-0.81	0.81	0.74	0.84	1.86	24598	3019	28	0	71	0	0	logfile
✔	8H0X	34417	2024-09-30	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.82	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.004	0.68	0.0	0.05	14.02	0.00	2.335	2.69	1.63	3.3	96.7	0.0	-0.16	1.60	0.82	0.89	3.74	25122	3117	6	0	48	0	0	logfile
✔	7Y76	33653	2024-09-30	2022-06-21	3.2	3.58	3.10	3.3	0.010	0.84	0.0	0.05	16.48	0.00	1.996	13.47	5.15	8.8	90.8	0.3	-3.40	0.74	0.84	2.10	3.3	0.003	0.66	0.0	0.04	15.95	0.00	2.083	6.09	2.08	6.5	93.5	0.1	-0.05	0.44	0.74	0.87	1.52	25180	3042	26	0	46	0	0	logfile
✘	7QDH	13919	2024-09-30	2021-11-27	4.2	4.45	4.27	4.4	0.011	1.50	16.0	0.10	14.72	0.01	1.441	62.81	7.70	4.0	95.6	0.4	0.10	0.70	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25712	3219	16	0	44	0	0	logfile
✔	8H0Y	34418	2024-09-30	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.85	0.0	0.06	13.44	0.01	2.274	2.60	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	3.0	0.003	0.54	0.0	0.05	14.56	0.00	2.533	3.35	1.53	2.6	97.4	0.0	-0.06	1.14	0.81	0.87	3.30	24999	3094	6	0	52	0	0	logfile
✔	7TJJ	25927	2024-09-30	2022-01-16	2.7	3.01	2.74	2.9	0.006	0.94	0.0	0.06	17.52	0.01	2.003	3.99	0.47	2.9	97.1	0.0	-1.54	0.82	0.88	4.00	2.9	0.004	0.63	0.0	0.04	19.09	0.00	1.923	5.65	1.36	2.9	97.1	0.0	1.14	1.09	0.83	0.91	3.54	24732	2791	22	82	8	160	0	logfile
✔	6YRF	10888	2024-09-30	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.54	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.003	0.72	0.0	0.05	15.90	0.00	2.354	12.16	2.20	9.2	90.8	0.0	-0.67	0.58	0.91	0.82	0.90	24828	3108	4	0	0	0	0	logfile
✔	7KRZ	23013	2024-09-30	2020-11-20	3.2	2.56	3.10	2.8	0.007	0.80	0.0	0.05	14.69	0.00	1.906	7.74	0.19	5.8	94.2	0.0	-2.84	0.74	0.77	3.22	2.8	0.003	0.58	0.0	0.04	15.98	0.00	2.029	6.21	1.77	4.2	95.8	0.0	0.60	1.25	0.79	0.81	2.77	24745	3127	13	0	28	0	0	logfile
✔	8BJA	16087	2024-09-30	2022-11-03	3.0	2.93	3.30	3.3	0.004	0.81	0.0	0.04	17.12	0.01	2.169	11.25	3.67	5.4	94.4	0.2	-0.80	0.78	0.75	1.53	3.3	0.004	0.87	0.0	0.04	17.41	0.01	2.330	9.91	3.46	5.4	94.5	0.1	-0.17	0.58	0.78	0.76	1.52	25204	3201	4	0	6	0	0	logfile
✔	6ACD	9589	2024-09-30	2018-07-26	3.9	4.22	—	4.0	0.007	1.04	0.0	0.06	9.72	0.01	1.629	7.98	0.25	14.3	85.1	0.5	-4.47	0.79	0.77	1.25	4.0	0.004	0.77	0.0	0.05	13.76	0.00	2.372	13.38	2.25	12.3	87.5	0.2	-2.51	1.59	0.79	0.78	1.22	24845	3187	3	0	0	0	0	logfile
✔	7TJK	25928	2024-09-30	2022-01-16	2.7	3.10	2.76	2.9	0.005	0.89	0.0	0.05	17.38	0.01	1.886	3.81	0.39	2.9	97.1	0.0	-1.60	0.82	0.87	3.60	3.0	0.005	0.65	0.0	0.04	18.98	0.00	1.896	5.23	1.17	2.9	97.1	0.0	1.19	1.10	0.82	0.90	3.44	24668	2785	21	82	8	130	0	logfile
✔	7Y75	33652	2024-09-30	2022-06-21	3.1	3.35	3.04	3.3	0.008	0.80	0.0	0.05	16.44	0.00	1.927	10.11	4.43	7.1	92.7	0.2	-2.95	0.75	0.86	1.91	3.3	0.002	0.62	0.0	0.04	16.00	0.00	2.106	5.18	1.86	5.3	94.6	0.1	0.30	0.46	0.73	0.86	1.70	25186	3042	26	0	46	0	0	logfile
✔	8H0Z	34419	2024-09-30	2022-09-30	2.99	3.23	3.00	3.2	0.008	0.92	0.0	0.06	12.60	0.01	2.229	3.18	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.003	0.59	0.0	0.04	13.67	0.00	2.479	3.34	1.56	3.6	96.4	0.0	-0.21	0.34	0.81	0.86	3.00	25047	3102	9	0	51	0	0	logfile
✔	6PE4	20322	2024-09-30	2019-06-20	3.1	3.17	—	3.1	0.008	1.10	1.0	0.06	10.56	0.01	2.164	2.66	0.30	5.7	94.2	0.2	-4.12	0.72	0.88	3.81	3.1	0.005	0.85	1.0	0.04	14.35	0.00	2.354	4.27	2.28	4.9	95.0	0.1	0.35	1.18	0.71	0.90	2.47	24914	3295	16	0	0	0	0	logfile
✔	7F0L	31400	2024-09-30	2021-06-05	2.94	2.47	—	3.0	0.019	1.90	0.0	0.06	22.13	0.02	1.988	10.82	1.93	2.9	97.1	0.0	0.03	0.65	0.82	4.03	3.0	0.005	0.78	0.0	0.04	18.18	0.00	1.989	9.84	2.57	2.7	97.3	0.0	2.14	0.38	0.63	0.83	3.28	23458	2277	66	0	112	0	0	logfile
✔	8iGS	35439	2024-09-30	2023-02-21	3.4	3.65	3.25	3.4	0.003	0.59	0.0	0.04	19.32	0.00	1.981	5.07	1.04	5.5	94.5	0.0	0.31	0.80	0.87	1.89	3.4	0.003	0.59	0.0	0.04	19.51	0.00	2.024	6.18	2.33	4.6	95.4	0.0	0.68	0.42	0.81	0.88	1.88	24481	2925	8	73	3	0	0	logfile
✔	7T22	25609	2024-09-30	2021-12-02	4.2	4.73	—	4.4	0.004	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.003	1.07	0.0	0.04	12.27	0.00	1.091	14.57	0.00	2.3	97.7	0.0	1.32	0.90	0.85	0.78	—	24536	3084	15	13	15	0	0	logfile
✔	6GC4	4380	2024-09-30	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	22.72	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.006	0.71	0.0	0.04	23.16	0.01	2.034	17.83	0.09	10.1	89.7	0.1	-2.37	0.99	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6V8o	21107	2024-09-30	2019-12-11	3.07	3.27	3.04	3.3	0.004	0.55	0.0	0.04	11.21	0.00	2.149	6.80	2.31	6.9	93.0	0.1	-1.57	0.67	0.77	1.92	3.3	0.003	0.58	0.0	0.04	15.03	0.00	2.401	5.89	2.13	5.3	94.7	0.0	1.34	2.88	0.69	0.83	1.77	25103	3012	23	0	145	0	0	logfile

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