Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i51	35190	2024-09-30	2023-01-21	2.76	2.98	2.80	3.0	0.012	1.10	18.0	0.10	16.68	0.01	2.130	10.05	0.69	8.5	91.3	0.2	-1.86	0.71	0.73	3.66	3.0	0.005	0.73	0.0	0.05	17.24	0.00	2.335	6.74	2.18	8.3	91.5	0.2	-0.87	1.12	0.79	0.86	3.80	25416	3168	12	0	18	0	0	logfile
✔	8JMA	36411	2024-09-30	2023-06-04	2.5	2.43	2.54	2.6	0.004	0.51	0.0	0.04	16.39	0.00	2.210	4.35	0.61	1.3	98.7	0.0	3.05	0.61	0.81	3.53	2.6	0.002	0.43	0.0	0.03	16.51	0.00	2.296	2.19	0.38	2.4	97.6	0.0	4.00	0.26	0.60	0.81	3.67	24568	1524	8	0	4	0	12472	logfile
✔	8JYM	36726	2024-09-30	2023-07-03	2.79	3.39	2.76	3.2	0.004	0.55	0.0	0.05	12.78	0.00	0.546	6.93	0.00	3.6	96.4	0.0	0.19	0.83	0.85	3.31	3.2	0.003	0.53	0.0	0.04	13.89	0.00	2.473	3.82	0.66	3.0	97.0	0.0	0.36	0.37	0.85	0.87	2.98	24924	3099	12	0	48	0	0	logfile
✔	8i22	35129	2024-09-30	2023-01-13	2.15	2.49	2.17	2.4	0.007	0.72	0.0	0.06	17.84	0.00	2.236	8.42	0.65	3.9	95.9	0.2	-0.28	0.80	0.86	4.96	2.4	0.003	0.58	0.0	0.05	17.41	0.00	2.519	5.42	0.65	3.5	96.1	0.4	0.25	0.42	0.75	0.87	4.62	25398	3180	12	0	6	0	0	logfile
✔	8RML	19363	2024-09-30	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.1	0.002	0.62	0.0	0.04	15.69	0.00	2.389	8.02	2.78	3.0	97.0	0.0	1.94	0.50	0.64	0.76	1.08	24454	3088	13	0	0	0	0	logfile
✔	8UXW	42787	2024-09-30	2023-11-11	2.7	2.92	2.78	3.0	0.013	1.92	15.0	0.10	15.35	0.02	1.860	0.28	2.69	3.0	97.0	0.0	-1.20	0.48	0.72	4.73	3.0	0.003	0.61	0.0	0.04	16.70	0.00	1.868	3.16	1.48	2.0	98.0	0.0	0.75	1.11	0.62	0.85	3.86	77359	4916	25	0	20	0	38330	logfile
✔	8GC2	29926	2024-09-30	2023-03-01	4.1	4.86	4.16	3.2	0.005	0.81	0.0	0.11	16.86	0.02	2.284	5.92	0.15	4.4	95.6	0.0	-2.39	0.82	0.83	—	3.1	0.004	0.62	0.0	0.04	14.07	0.00	2.343	9.58	0.00	4.5	95.5	0.0	0.45	1.55	0.83	0.85	—	24342	2993	16	0	45	0	0	logfile
✔	8HSY	35008	2024-09-30	2022-12-20	2.53	2.70	2.54	2.6	0.004	0.71	0.0	0.05	15.46	0.00	2.153	7.52	0.80	6.2	93.6	0.2	-0.75	0.83	0.86	3.64	2.6	0.005	0.67	0.0	0.05	16.33	0.00	2.556	4.89	2.21	7.3	92.5	0.2	-0.38	0.40	0.84	0.88	3.63	25320	3180	6	0	0	0	0	logfile
✘	9B03	44026	2024-09-30	2024-03-11	2.95	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23896	3020	14	0	12	0	0	logfile
✘	8Fo1	29338	2024-09-30	2022-12-29	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24481	1596	4	0	0	0	12140	logfile
✔	8X84	38135	2024-09-30	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.44	0.0	0.03	15.25	0.00	2.485	3.62	0.91	1.1	98.9	0.0	3.63	0.47	0.59	0.80	2.83	24534	1524	12	0	6	4	12444	logfile
✔	8JM9	36410	2024-09-30	2023-06-04	2.6	2.53	2.63	2.8	0.003	0.47	0.0	0.03	15.46	0.00	2.099	5.71	0.61	1.3	98.7	0.0	3.59	0.45	0.69	2.96	2.8	0.004	0.49	0.0	0.03	15.66	0.00	2.461	2.90	0.91	2.1	97.9	0.0	3.25	0.39	0.57	0.80	3.30	24520	1524	4	0	0	0	12472	logfile
✔	8i6M	35200	2024-09-30	2023-01-28	2.59	2.77	2.62	2.7	0.007	0.84	18.0	0.07	16.14	0.01	2.165	9.83	0.80	8.2	91.6	0.2	-1.29	0.72	0.75	3.87	2.7	0.003	0.65	0.0	0.05	16.92	0.00	1.973	7.12	1.92	7.4	92.4	0.2	-0.70	3.08	0.77	0.85	3.37	25464	3168	12	0	18	0	0	logfile
✔	8C5R	16441	2024-09-30	2023-01-10	3.7	3.73	3.75	3.7	0.003	0.59	0.0	0.04	8.09	0.00	0.567	18.93	0.00	3.1	96.6	0.3	-3.20	0.43	0.38	0.84	3.7	0.004	0.69	0.0	0.05	13.68	0.00	2.379	10.83	1.90	5.8	94.2	0.0	-1.22	1.22	0.61	0.73	1.74	24969	3178	3	0	0	0	0	logfile
✔	8HZX	35091	2024-09-30	2023-01-09	2.68	2.91	2.72	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.004	0.62	0.0	0.05	16.31	0.00	2.486	6.21	1.77	7.2	92.6	0.2	-0.42	1.49	0.79	0.86	3.98	25320	3180	6	0	0	0	0	logfile
✔	8HRi	34974	2024-09-30	2022-12-15	2.9	3.08	2.94	3.1	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.76	0.26	4.9	94.8	0.3	-0.13	0.39	0.39	0.61	3.1	0.003	0.64	0.0	0.04	16.12	0.01	2.381	5.04	1.21	4.7	95.3	0.0	-0.62	1.09	0.58	0.76	1.45	24531	3126	3	0	0	0	0	logfile
✔	8CGL	16647	2024-09-30	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.72	0.0	0.05	4.76	0.00	2.395	4.90	0.00	9.2	90.8	0.0	-0.62	1.41	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	8HRJ	34975	2024-09-30	2022-12-15	3.1	3.46	3.33	3.4	0.003	0.61	0.0	0.05	14.23	0.01	2.203	5.91	0.26	4.9	94.8	0.3	-0.13	0.47	0.42	0.70	3.4	0.003	0.66	0.0	0.04	15.85	0.00	2.394	5.91	1.57	5.5	94.5	0.0	-0.37	1.68	0.65	0.74	1.50	24531	3126	3	0	0	0	0	logfile
✔	8TNU	41426	2024-09-30	2023-08-02	3.36	4.15	3.44	3.8	0.005	0.97	1.0	0.06	14.07	0.01	1.539	4.50	0.00	4.2	95.8	0.0	-1.28	0.84	0.81	1.81	3.8	0.004	0.65	0.0	0.04	13.54	0.00	2.307	7.59	1.38	4.0	96.0	0.0	0.19	0.96	0.85	0.86	1.85	24893	3039	41	0	93	0	0	logfile
✔	8QZ9	18773	2024-09-30	2023-10-26	2.95	3.51	3.11	3.3	0.003	0.48	0.0	0.04	13.37	0.00	2.202	3.64	0.00	4.1	95.9	0.0	0.82	0.79	0.87	3.07	3.3	0.003	0.57	0.0	0.04	15.61	0.00	2.481	2.95	1.46	4.3	95.7	0.0	0.95	0.90	0.76	0.85	2.60	24217	3213	16	0	21	0	0	logfile

• Page 1 of 538
• next →