Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZ8	24754	2024-09-27	2021-08-27	4.1	3.82	—	4.0	0.010	1.29	0.0	0.06	17.56	0.01	2.246	5.13	0.93	4.1	95.8	0.1	-4.14	0.66	0.74	—	3.7	0.003	0.73	0.0	0.04	15.60	0.00	2.446	11.33	0.00	3.9	96.1	0.0	0.40	0.94	0.67	0.77	—	16722	2044	8	0	26	0	0	logfile
✔	8HAJ	34592	2024-09-27	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.86	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.64	0.0	0.04	26.39	0.00	2.356	13.84	0.00	3.3	96.7	0.0	1.46	0.76	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	5U0P	8479	2024-09-28	2016-11-26	4.4	4.99	—	4.2	0.007	1.19	1.0	0.05	8.62	0.01	1.541	18.54	0.00	8.3	88.2	3.4	-2.22	0.75	0.62	—	4.2	0.003	0.72	0.0	0.04	11.30	0.00	2.449	14.41	0.00	8.4	90.9	0.6	-0.35	1.64	0.82	0.78	—	20268	2557	17	0	372	0	0	logfile
✔	7NNH	12477	2024-09-23	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.3	0.004	1.08	0.0	0.05	16.97	0.01	2.495	21.50	2.55	20.5	79.4	0.2	-2.77	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	6N4R	0342	2024-09-27	2018-11-20	4.2	4.09	4.16	4.1	0.008	1.07	0.0	0.06	10.26	0.01	2.030	4.60	0.23	6.8	93.2	0.0	-3.27	0.66	0.76	—	4.1	0.003	0.71	0.0	0.04	12.55	0.00	2.499	8.80	0.00	6.0	94.0	0.0	-0.62	0.82	0.64	0.76	—	15444	1942	12	0	0	0	0	logfile
✔	8DYU	27782	2024-09-24	2022-08-05	4.0	4.36	4.20	4.3	0.005	0.87	2.0	0.05	14.19	0.01	2.167	4.21	0.23	3.1	96.8	0.0	-0.21	0.72	0.68	—	4.3	0.003	0.61	0.0	0.04	15.88	0.00	2.268	8.48	1.56	3.7	96.3	0.0	0.85	0.87	0.73	0.72	—	48178	3174	4	0	4	0	23568	logfile
✔	6DZV	8940	2024-09-24	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.70	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.8	0.003	0.72	0.0	0.04	12.53	0.00	2.531	10.91	0.00	4.7	95.3	0.0	-0.81	1.49	0.53	0.70	—	6121	765	5	0	4	0	0	logfile
✔	6oLP	20118	2024-09-28	2019-04-16	4.2	4.36	4.20	4.2	0.009	1.13	0.0	0.07	15.44	0.01	2.224	7.16	0.57	11.7	88.3	0.0	-4.54	0.74	0.81	—	4.2	0.004	0.76	0.0	0.05	11.93	0.00	2.422	10.89	0.10	8.9	91.1	0.0	-2.44	0.71	0.74	0.82	—	18868	2182	40	0	126	0	0	logfile
✔	6UM2	20816	2024-09-26	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.41	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	4.3	0.005	0.83	0.0	0.05	13.81	0.01	2.464	12.83	0.00	12.8	87.2	0.0	-3.90	1.40	0.80	0.77	—	13094	1686	3	0	7	0	0	logfile
✔	7YR6	34047	2024-09-23	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.004	0.78	0.0	0.04	25.96	0.00	2.356	29.40	0.00	23.6	76.4	0.0	-5.37	0.78	0.82	0.80	—	4248	220	5	118	0	0	0	logfile
✘	7EWP	31360	2024-09-30	2021-05-25	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20179	1816	4	0	0	0	6804	logfile
✔	8E5P	27917	2024-09-28	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.51	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.002	0.66	0.0	0.04	12.32	0.00	1.507	11.63	0.00	2.2	97.8	0.0	1.02	1.57	0.86	0.78	—	20038	2502	13	8	18	0	0	logfile
✔	7AFK	11768	2024-09-28	2020-09-19	4.9	5.45	4.72	3.0	0.007	0.89	1.0	0.05	23.87	0.00	1.519	42.37	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.7	0.005	0.71	0.0	0.04	23.02	0.01	1.855	28.47	0.00	6.0	94.0	0.0	-1.03	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	6UoX	20834	2024-09-25	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.72	0.0	0.04	12.15	0.00	2.415	6.53	0.00	5.9	94.1	0.0	-1.51	0.95	0.68	0.81	—	9138	1161	4	0	14	0	0	logfile
✔	7PXB	13696	2024-09-29	2021-10-08	4.0	3.59	—	3.4	0.004	0.73	0.0	0.04	11.58	0.00	2.022	8.96	2.05	3.6	96.4	0.0	1.14	0.77	0.74	—	3.4	0.003	0.64	0.0	0.04	14.90	0.00	1.936	9.90	1.84	4.8	95.2	0.0	0.13	1.41	0.78	0.76	—	22286	2828	13	0	12	0	0	logfile
✔	5oQJ	3846	2024-09-26	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.58	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.005	0.74	0.0	0.04	14.52	0.00	1.986	12.22	0.00	6.2	93.6	0.2	-0.26	1.11	0.84	0.81	—	62931	7649	55	148	557	0	0	logfile
✔	6VQ7	21318	2024-09-26	2020-02-04	4.0	4.63	—	4.2	0.009	0.98	2.0	0.06	10.86	0.01	2.219	3.67	0.61	2.5	97.3	0.2	0.65	0.79	0.72	—	4.3	0.004	0.85	0.0	0.05	14.36	0.00	1.924	16.45	1.84	3.4	96.6	0.0	1.44	1.45	0.82	0.80	—	62325	8454	35	0	2	0	0	logfile
✔	8HAi	34591	2024-09-27	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.66	0.0	0.04	26.20	0.00	2.246	15.30	0.09	2.6	97.4	0.0	1.43	1.68	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	7F4U	31454	2024-09-24	2021-06-21	4.2	3.10	—	3.0	0.004	0.87	0.0	0.04	14.59	0.01	2.087	18.07	0.00	14.4	85.1	0.6	-5.17	0.65	0.58	—	2.4	0.003	0.81	0.0	0.04	13.46	0.01	2.362	11.72	0.17	11.1	88.8	0.1	-1.04	0.76	0.70	0.71	—	8079	904	4	0	323	0	0	logfile
✔	7RYY	24748	2024-09-27	2021-08-26	4.4	3.68	—	7.0	0.005	1.01	0.0	0.05	11.50	0.01	2.230	5.96	0.59	3.6	96.4	0.0	-4.08	0.63	0.51	—	3.5	0.003	0.76	0.0	0.04	12.71	0.00	2.391	14.31	0.06	3.7	96.3	0.0	0.20	1.81	0.72	0.73	—	15836	2024	8	0	2	0	0	logfile

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