Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HMF	34898	2024-09-30	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	4.5	0.002	0.59	0.0	0.04	14.54	0.00	2.412	10.40	0.00	4.4	95.5	0.2	0.78	0.58	0.91	0.84	—	25330	3135	4	0	2	0	0	logfile
✔	8TAU	41142	2024-09-25	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.2	0.005	0.79	0.0	0.00	5.28	0.00	1.985	7.43	0.00	15.9	84.0	0.0	-2.66	0.72	0.78	0.74	—	54106	9002	25	0	4	0	18087	logfile
✔	8T8F	41098	2024-09-26	2023-06-22	4.8	5.11	4.71	4.7	0.003	0.75	1.0	0.05	13.37	0.00	2.201	18.73	0.14	7.3	92.7	0.0	-1.53	0.76	0.63	—	4.7	0.003	0.68	0.0	0.04	13.96	0.00	2.404	11.34	0.07	6.9	93.1	0.0	-0.38	1.27	0.77	0.66	—	13050	1623	5	0	0	0	0	logfile
✔	8TA6	41130	2024-09-23	2023-06-26	4.03	4.31	5.52	4.2	0.013	1.99	1.0	0.10	15.10	0.01	2.524	0.91	2.10	9.4	90.2	0.4	-2.23	0.44	0.72	—	4.2	0.003	0.71	0.0	0.04	13.96	0.00	2.501	9.08	0.00	3.8	96.2	0.0	-1.46	1.54	0.45	0.68	—	2158	274	2	0	0	0	0	logfile
✘	8TTB	41604	2024-09-29	2023-08-13	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21924	1376	5	0	2	0	10922	logfile
✔	8oDT	16816	2024-09-28	2023-03-09	4.2	4.35	4.11	4.2	0.006	0.71	0.0	0.04	12.87	0.00	1.882	17.39	3.61	2.8	97.1	0.1	1.77	0.57	0.66	—	4.2	0.005	0.68	0.0	0.04	12.59	0.01	2.149	15.64	0.00	3.4	96.6	0.0	1.27	4.44	0.59	0.68	—	18800	1188	7	0	0	0	9496	logfile
✔	8TJV	41312	2024-09-25	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.56	0.01	1.106	11.00	0.00	0.0	0.0	0.0	—	0.91	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8FYJ	29580	2024-09-28	2023-01-26	4.0	4.20	3.96	4.1	0.005	0.87	0.0	0.05	18.49	0.01	2.105	17.30	0.61	5.5	94.5	0.0	-1.55	0.75	0.80	—	4.1	0.003	0.78	0.0	0.05	16.41	0.00	2.454	13.68	4.39	6.0	94.0	0.0	-1.22	0.98	0.76	0.80	—	15027	1850	20	0	34	0	0	logfile
✔	8PoG	17791	2024-09-23	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8TJX	41313	2024-09-24	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.62	0.0	0.04	24.02	0.01	1.836	9.60	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✘	8QHC	18407	2024-09-27	2023-09-07	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14829	1764	5	61	2	0	0	logfile
✔	8iDD	35364	2024-09-24	2023-02-12	4.0	4.48	3.92	4.1	0.004	1.02	0.0	0.06	12.75	0.00	2.302	5.78	0.24	4.7	95.3	0.0	-3.26	0.74	0.78	—	4.1	0.003	0.74	0.0	0.04	13.94	0.00	2.434	10.51	1.66	4.7	95.3	0.0	-0.92	0.46	0.74	0.80	—	8768	1199	7	0	2	0	0	logfile
✔	8W7M	37343	2024-09-24	2023-08-30	4.12	6.49	4.21	4.1	0.003	0.58	0.0	0.04	14.05	0.00	1.822	18.62	0.55	4.4	95.5	0.1	-0.19	0.87	0.80	—	4.2	0.003	0.62	0.0	0.04	14.24	0.00	1.938	10.07	0.00	3.5	96.5	0.0	0.64	1.16	0.88	0.83	—	51196	6394	22	8	13	0	0	logfile
✘	8G4o	29728	2024-09-28	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile
✘	8QFS	18383	2024-09-26	2023-09-04	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13294	1576	4	61	2	0	0	logfile
✔	8FTK	29439	2024-09-24	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.002	0.54	0.0	0.04	4.64	0.00	2.329	1.93	0.00	8.3	91.7	0.0	0.47	1.25	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✘	8PBB	17583	2024-09-26	2023-06-09	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13334	1684	6	0	2	0	0	logfile
✔	8TJU	41311	2024-09-25	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.74	0.01	1.794	24.14	0.00	0.0	0.0	0.0	—	0.40	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8F7T	28910	2024-09-26	2022-11-20	4.1	4.86	4.16	4.3	0.006	0.88	1.0	0.05	21.49	0.01	1.835	16.60	1.36	10.4	89.0	0.6	-2.43	0.77	0.71	—	4.4	0.003	0.80	0.0	0.05	14.35	0.00	2.374	13.38	0.14	8.1	91.5	0.4	-1.55	1.53	0.79	0.82	—	13326	1641	15	0	21	0	0	logfile
✔	8QXA	18716	2024-09-23	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.32	0.00	2.541	15.94	0.00	8.5	91.5	0.0	-4.42	1.43	0.44	0.70	—	3696	540	12	0	0	0	0	logfile

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