Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q5A	13830	2024-09-27	2021-11-03	2.46	2.69	—	2.6	0.012	1.12	0.0	0.06	9.68	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.052	2.81	43.0	0.20	16.17	0.01	1.689	7.32	6.75	0.0	100.0	0.0	1.18	1.63	0.68	0.87	6.18	61600	5600	2400	0	1600	0	0	logfile
✔	8Q30	18119	2024-09-30	2023-08-03	3.22	3.61	3.25	3.5	0.006	0.82	3.0	0.06	13.15	0.01	1.978	8.06	0.45	0.9	99.1	0.0	1.02	0.77	0.89	3.64	3.5	0.003	0.63	0.0	0.05	13.11	0.00	2.510	6.15	2.13	1.3	98.7	0.0	1.47	1.12	0.78	0.90	3.42	77784	10152	288	0	408	0	0	logfile
✔	5W7V	8781	2024-09-28	2017-06-20	3.8	3.42	—	3.5	0.007	0.77	0.0	0.06	12.79	0.00	2.365	15.84	0.00	1.4	98.6	0.0	-2.52	0.47	0.74	3.24	3.4	0.004	0.73	0.0	0.06	15.76	0.00	2.561	7.07	7.71	2.4	97.6	0.0	-0.63	1.27	0.53	0.79	3.98	20430	2640	270	0	0	0	0	logfile
✔	6SAG	10130	2024-09-25	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	13.90	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.59	0.0	0.04	16.00	0.00	2.251	2.53	1.50	3.6	96.4	0.0	1.62	0.98	0.59	0.89	6.73	54080	6120	240	120	240	2840	0	logfile
✘	9CX6	45979	2024-09-23	2024-07-30	3.2	3.35	3.13	3.5	0.009	1.46	0.0	0.07	12.63	0.01	0.182	28.34	0.00	5.0	95.0	0.0	-4.11	0.47	0.62	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49250	7200	200	0	0	250	0	logfile
✔	7LQG	23485	2024-09-26	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.110	4.27	170.0	0.30	23.47	0.02	1.928	112.95	25.35	17.5	82.5	0.0	-6.19	1.11	0.67	0.87	3.23	12096	1152	144	0	0	0	0	logfile
✔	7LQH	23486	2024-09-26	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	180.0	0.30	23.66	0.02	1.889	109.96	25.00	20.5	79.5	0.0	-5.87	3.62	0.65	0.87	3.05	12096	1152	144	0	0	0	0	logfile
✘	8QU9	18658	2024-09-28	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✔	7VY2	32192	2024-09-23	2021-11-13	2.75	2.61	—	2.7	0.019	1.91	0.0	0.06	21.91	0.02	1.943	15.57	3.39	2.9	97.1	0.0	1.62	0.71	0.79	3.16	2.7	0.003	0.72	0.0	0.04	18.25	0.00	1.911	13.05	2.24	2.6	97.4	0.0	2.10	0.48	0.72	0.83	2.79	46292	4534	131	0	201	0	0	logfile
✔	7SCA	25031	2024-09-25	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	14.95	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.003	0.62	0.0	0.04	16.40	0.00	2.427	7.14	1.19	1.1	98.9	0.0	2.74	1.09	0.79	0.85	5.36	55437	6836	116	0	54	1325	0	logfile
✔	7SC8	25029	2024-09-25	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	14.65	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.67	2.0	0.04	16.07	0.00	1.926	7.46	1.31	1.0	98.9	0.1	3.06	0.38	0.86	0.86	3.86	56784	6836	116	0	54	2672	0	logfile
✔	6WL8	21817	2024-09-29	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.003	0.58	0.0	0.03	15.32	0.00	2.353	9.20	0.00	0.3	99.7	0.0	4.72	1.80	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	6WKX	21812	2024-09-26	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	6WL9	21818	2024-09-29	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.82	0.0	0.04	14.43	0.00	2.293	12.95	0.00	0.1	99.9	0.0	3.18	1.41	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	7XM1	33289	2024-09-26	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	4.0	0.005	0.59	0.0	0.04	18.95	0.00	2.341	3.72	2.25	3.3	96.7	0.0	2.32	0.64	0.74	0.84	1.79	60240	7380	101	0	60	0	0	logfile
✔	7LQi	23487	2024-09-24	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.87	0.01	2.042	118.35	19.67	24.2	75.8	0.0	-4.99	1.41	0.64	0.85	3.68	8400	800	100	0	0	0	0	logfile
✔	7UUQ	26800	2024-09-23	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.883	46.48	13.19	67.3	30.4	2.4	-10.55	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7Q2S	13782	2024-09-26	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	12.76	0.01	1.216	18.47	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.003	0.79	0.0	0.04	18.07	0.00	2.051	13.34	4.85	4.1	95.9	0.0	-1.88	1.07	0.51	0.68	1.68	62377	7497	98	147	0	0	0	logfile
✘	2XEA	1730	2024-09-26	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.75	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile

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