Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	5M32	4146	2024-09-29	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.87	0.0	0.05	15.02	0.01	1.931	12.93	3.11	10.9	88.8	0.3	-1.94	1.49	0.83	0.81	1.27	76085	10500	54	0	8	0	0	logfile
✔	6K9Q	9952	2024-09-30	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.82	3.0	0.04	14.66	0.00	1.905	13.72	3.81	5.4	94.6	0.0	-1.30	0.56	0.51	0.80	1.87	76902	10451	26	0	0	0	0	logfile
✔	6iD0	9646	2024-09-30	2018-09-07	2.9	3.04	—	3.0	0.009	1.39	19.0	0.10	16.69	0.01	1.607	10.97	1.46	7.0	91.9	1.0	-2.86	0.63	0.68	2.82	3.0	0.006	0.85	1.0	0.05	18.01	0.01	1.944	9.84	3.54	6.7	93.0	0.3	0.32	0.75	0.69	0.80	2.30	78004	10389	48	405	16	0	0	logfile
✔	8HDR	34678	2024-09-30	2022-11-06	3.66	3.32	3.68	3.3	0.005	0.66	0.0	0.05	13.59	0.00	2.116	12.84	8.30	9.0	91.0	0.0	-2.65	0.60	0.74	1.89	3.3	0.006	0.78	1.0	0.05	16.20	0.00	1.529	10.58	6.55	8.3	91.7	0.0	-2.18	0.84	0.63	0.78	2.11	78708	10296	54	0	0	0	0	logfile
✔	9CEo	45505	2024-09-29	2024-06-26	2.76	3.07	2.80	3.0	0.003	0.65	0.0	0.04	12.76	0.00	2.121	8.18	0.03	1.7	98.2	0.1	0.09	0.58	0.85	2.90	3.0	0.003	0.58	0.0	0.03	15.17	0.00	2.118	5.02	1.27	0.7	99.3	0.0	4.92	0.40	0.58	0.87	2.44	73416	10260	38	0	0	0	0	logfile
✔	8iYL	35825	2024-09-30	2023-04-05	3.0	3.35	3.11	3.2	0.004	0.66	0.0	0.05	18.10	0.01	2.040	11.95	7.11	7.1	92.3	0.6	-1.70	0.78	0.84	2.48	3.2	0.006	0.78	2.0	0.05	17.93	0.01	2.071	10.13	4.65	8.0	91.4	0.6	-1.71	0.26	0.79	0.86	2.68	77370	10248	45	0	3	0	0	logfile
✔	8iYK	35824	2024-09-30	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.77	4.0	0.05	17.84	0.00	1.964	8.45	5.45	7.1	92.5	0.4	-1.45	0.25	0.78	0.87	2.47	77370	10248	45	0	3	0	0	logfile
✔	8Q30	18119	2024-09-30	2023-08-03	3.22	3.61	3.25	3.5	0.006	0.82	3.0	0.06	13.15	0.01	1.978	8.06	0.45	0.9	99.1	0.0	1.02	0.77	0.89	3.64	3.5	0.003	0.63	0.0	0.05	13.11	0.00	2.510	6.15	2.13	1.3	98.7	0.0	1.47	1.12	0.78	0.90	3.42	77784	10152	288	0	408	0	0	logfile
✔	8RBZ	19040	2024-09-29	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.2	0.003	0.69	0.0	0.04	15.10	0.00	2.055	8.46	1.28	3.6	96.4	0.0	1.48	1.21	0.80	0.70	1.32	74102	10096	23	0	13	0	0	logfile
✔	9CEP	45506	2024-09-28	2024-06-26	3.13	3.60	3.12	3.2	0.007	0.75	0.0	0.04	13.53	0.00	2.092	5.97	0.01	1.3	98.6	0.1	0.78	0.56	0.89	3.19	3.2	0.004	0.48	0.0	0.03	14.39	0.00	2.560	4.03	0.39	1.0	99.0	0.0	4.62	0.87	0.56	0.88	2.53	71669	10027	37	0	0	0	0	logfile
✔	9CEM	45504	2024-09-28	2024-06-26	2.46	2.77	2.48	2.8	0.003	0.61	0.0	0.04	13.44	0.00	2.021	7.74	0.04	1.1	98.9	0.0	0.00	0.57	0.85	3.87	2.7	0.003	0.50	0.0	0.03	15.80	0.00	2.277	4.32	1.69	0.6	99.4	0.0	4.14	0.37	0.56	0.86	3.63	72372	9990	37	0	0	0	0	logfile
✔	8UXK	42767	2024-09-28	2023-11-09	3.02	3.35	3.07	3.3	0.003	0.63	0.0	0.04	13.86	0.00	2.027	10.72	0.08	1.6	98.4	0.1	-0.24	0.55	0.83	2.62	3.3	0.004	0.67	4.0	0.04	15.69	0.00	2.181	8.39	1.45	0.9	99.1	0.0	3.65	0.90	0.55	0.84	2.20	72372	9990	37	0	0	0	0	logfile
✔	7APK	11857	2024-09-29	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.004	0.72	0.0	0.04	13.07	0.00	2.485	9.88	1.20	5.7	94.1	0.1	1.06	1.59	0.50	0.44	0.84	72697	9893	30	0	74	0	0	logfile
✔	8JAN	36130	2024-09-29	2023-05-06	3.3	3.48	3.09	3.4	0.003	0.53	0.0	0.04	12.83	0.00	2.199	4.25	0.00	4.2	95.8	0.0	-0.26	0.72	0.89	3.06	3.4	0.003	0.53	2.0	0.04	14.37	0.00	2.326	3.42	0.64	4.0	96.0	0.0	-0.44	0.23	0.73	0.91	2.77	75114	9834	30	0	0	0	0	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	7QTT	14146	2024-09-29	2022-01-15	3.1	4.66	2.92	2.3	0.004	0.85	1.0	0.10	16.59	0.01	2.124	3.97	0.04	4.5	95.2	0.2	-2.31	0.77	0.82	2.33	2.4	0.003	0.55	0.0	0.04	16.66	0.00	1.851	6.41	0.42	4.1	95.7	0.1	1.41	0.27	0.78	0.83	2.13	73537	9759	46	343	21	0	0	logfile
✔	8V40	42962	2024-09-29	2023-11-28	3.9	3.34	3.77	3.4	0.003	0.51	0.0	0.04	11.99	0.00	2.202	8.37	0.00	2.9	97.1	0.0	0.49	0.63	0.78	2.31	3.3	0.003	0.61	0.0	0.04	15.67	0.00	2.466	7.21	3.37	4.3	95.7	0.0	-0.82	1.28	0.63	0.78	2.09	76422	9732	42	0	0	0	0	logfile
✔	8V3Z	42961	2024-09-29	2023-11-28	3.6	3.28	3.45	3.3	0.003	0.50	0.0	0.04	16.10	0.00	2.135	7.03	0.24	2.6	97.4	0.0	-0.02	0.70	0.83	2.51	3.2	0.004	0.59	0.0	0.04	17.30	0.00	2.463	5.23	2.58	3.7	96.3	0.0	-0.48	0.42	0.70	0.82	2.42	76422	9732	42	0	0	0	0	logfile
✔	8UXJ	42766	2024-09-28	2023-11-09	2.71	3.03	2.75	3.0	0.003	0.57	0.0	0.04	11.93	0.00	2.072	7.23	0.04	1.5	98.5	0.0	2.76	0.51	0.82	3.58	3.0	0.004	0.54	0.0	0.04	14.88	0.00	2.358	4.90	1.30	0.8	99.2	0.0	3.78	0.37	0.54	0.85	3.19	69696	9720	36	0	0	0	0	logfile

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