Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7QDH	13919	2024-09-30	2021-11-27	4.2	4.45	4.27	4.4	0.011	1.50	16.0	0.10	14.72	0.01	1.441	62.81	7.70	4.0	95.6	0.4	0.10	0.70	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25712	3219	16	0	44	0	0	logfile
✔	6U86	20678	2024-09-28	2019-09-04	4.0	4.11	4.06	4.1	0.007	0.66	0.0	0.04	13.34	0.00	2.198	12.47	0.18	7.7	92.3	0.0	-3.88	0.67	0.81	—	4.1	0.003	0.70	0.0	0.04	16.62	0.00	2.516	8.43	2.66	3.0	97.0	0.0	1.37	1.70	0.68	0.83	—	20140	2472	4	0	0	0	0	logfile
✔	3J1B	5391	2024-09-26	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.85	0.0	0.05	15.00	0.01	2.426	12.93	0.00	4.8	94.4	0.8	0.80	2.24	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	6QVC	4647	2024-09-25	2019-03-01	4.0	4.37	3.88	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.05	0.0	0.05	14.46	0.00	2.535	16.20	2.78	6.3	93.7	0.0	0.43	1.36	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	6QVU	4657	2024-09-25	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	7.0	0.003	0.87	0.0	0.05	11.46	0.01	2.347	15.98	0.00	7.6	92.4	0.0	-0.45	1.38	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✘	7N7P	24230	2024-09-23	2021-06-10	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5400	626	4	0	2	0	0	logfile
✘	7RJE	24486	2024-09-25	2021-07-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57232	3818	24	0	10	0	27924	logfile
✔	7UWK	26834	2024-09-27	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	18.13	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.3	0.003	0.76	0.0	0.05	12.79	0.01	2.497	14.22	0.06	7.0	93.0	0.0	-1.76	1.87	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	7K79	22697	2024-09-26	2020-09-22	4.0	4.46	—	4.1	0.009	1.81	2.0	0.08	17.45	0.01	2.197	11.21	0.13	9.6	90.4	0.0	-3.78	0.79	0.74	—	4.0	0.003	0.76	0.0	0.04	18.08	0.00	2.504	12.47	3.78	6.9	93.1	0.0	-1.17	2.43	0.79	0.73	—	13272	1601	4	0	0	0	0	logfile
✔	7T77	25736	2024-09-27	2021-12-14	4.75	4.98	4.61	4.8	0.022	1.83	4.0	0.15	13.67	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.73	0.0	0.05	11.73	0.00	2.344	11.39	0.00	4.8	95.2	0.0	-0.42	1.52	0.81	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	7T76	25735	2024-09-27	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✘	8EFP	28087	2024-09-23	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4705	594	2	0	0	0	0	logfile
✔	6QVB	4646	2024-09-25	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.93	0.0	0.05	12.38	0.00	2.365	16.84	0.00	8.1	91.8	0.1	-0.39	0.88	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	7T73	25732	2024-09-27	2021-12-14	4.0	4.27	3.95	4.3	0.021	1.92	14.0	0.14	13.61	0.02	1.521	2.44	1.56	3.5	95.7	0.8	-0.60	0.74	0.78	—	4.3	0.005	0.97	1.0	0.05	14.31	0.01	2.212	10.82	2.87	3.7	96.1	0.1	-0.73	0.86	0.76	0.79	—	16010	1907	28	0	78	0	0	logfile
✘	7URC	26708	2024-09-23	2022-04-21	3.14	3.74	3.25	3.6	0.018	1.00	0.0	0.88	25.59	0.00	2.248	10.09	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5561	658	4	0	12	0	0	logfile
✔	7JK6	22363	2024-09-27	2020-07-27	4.0	4.53	3.98	4.0	0.008	1.27	0.0	0.07	14.92	0.01	1.967	5.90	0.24	4.4	95.6	0.0	-2.89	0.87	0.78	—	4.0	0.004	0.94	0.0	0.04	16.35	0.00	1.941	13.12	1.15	2.9	97.1	0.1	0.87	1.46	0.88	0.80	—	15161	1887	9	0	6	0	0	logfile
✔	6Y97	10733	2024-09-23	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.29	0.00	2.557	12.52	0.00	6.7	93.3	0.0	0.59	0.85	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	5V8L	8643	2024-09-29	2017-03-22	4.3	4.43	4.15	4.3	0.015	1.85	1.0	0.12	14.73	0.01	1.786	7.02	0.39	1.7	98.1	0.2	2.30	0.72	0.73	—	4.3	0.005	0.83	0.0	0.05	12.51	0.00	2.355	12.34	0.00	4.2	95.8	0.0	-0.06	1.02	0.74	0.79	—	22934	2635	63	0	157	0	0	logfile
✘	7W2J	32262	2024-09-27	2021-11-24	3.6	2.90	—	3.6	0.030	1.49	0.0	0.56	15.66	0.01	2.011	18.00	0.00	11.0	88.7	0.4	-2.64	0.65	0.79	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16522	2104	10	0	10	0	0	logfile
✔	6QVD	4649	2024-09-25	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.81	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.88	0.0	0.05	12.22	0.00	2.410	16.62	0.00	7.9	91.9	0.2	-0.39	1.39	0.63	0.57	—	9212	1192	2	0	0	0	0	logfile

• Page 1 of 538
• next →