Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2024-07-19	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	5G2Y	3332	2024-07-21	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	28.52	0.01	1.951	72.85	0.00	0.0	0.0	0.0	—	2.98	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7RX5	24725	2024-07-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.30	0.0	0.03	13.59	0.00	2.262	5.92	0.00	0.0	100.0	0.0	5.26	0.25	0.71	0.87	2.89	9120	1160	40	0	0	0	0	logfile
✔	8K1V	36805	2024-07-18	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.004	0.55	0.0	0.04	14.99	0.00	2.166	6.20	4.66	1.7	98.3	0.0	4.64	0.78	0.54	0.79	2.36	4059	484	6	0	11	2	0	logfile
✔	5G2X	3331	2024-07-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.02	0.0	0.05	25.19	0.01	1.900	45.40	4.54	22.7	76.1	1.3	-5.20	2.37	0.80	0.67	0.25	19072	487	3	704	0	0	0	logfile
✔	8PHP	17670	2024-07-27	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.003	0.53	0.0	0.04	15.68	0.00	2.200	5.90	0.98	1.9	98.1	0.0	1.98	1.35	0.76	0.91	3.03	40812	4968	24	0	0	0	0	logfile
✔	8CWY	27031	2024-07-28	2022-05-19	3.34	3.58	3.35	3.6	0.002	0.32	0.0	0.03	8.10	0.00	2.026	6.16	0.02	0.8	99.2	0.0	5.71	0.53	0.63	1.88	3.6	0.003	0.42	0.0	0.03	11.83	0.00	2.269	6.08	0.91	0.6	99.4	0.0	6.58	1.16	0.56	0.74	1.33	43620	6300	24	0	0	0	0	logfile
✔	7RZT	24777	2024-07-18	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.53	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.28	0.23	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	8CZi	27098	2024-07-18	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	7o5H	12736	2024-07-26	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	21.63	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	22.33	0.01	1.076	13.62	3.21	3.9	96.1	0.0	0.32	1.48	0.87	0.85	1.45	34436	1730	22	964	167	0	0	logfile
✔	7R9U	24331	2024-07-19	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.52	0.0	0.04	8.28	0.00	1.920	9.32	0.00	3.4	96.6	0.0	0.39	2.36	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7ZiR	14738	2024-07-18	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.13	0.00	2.312	0.55	0.00	3.7	96.3	0.0	-3.81	1.03	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	8K1J	36793	2024-07-18	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.50	0.0	0.04	15.00	0.00	2.250	4.13	0.98	1.7	98.3	0.0	4.81	0.61	0.60	0.82	1.11	4069	484	6	0	11	12	0	logfile
✔	8FEL	29032	2024-07-19	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.54	0.0	0.04	13.03	0.00	2.273	10.05	0.00	4.6	95.4	0.0	-0.37	1.69	0.73	0.44	—	9201	1191	3	0	0	0	0	logfile
✔	7R9K	24328	2024-07-19	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.53	0.0	0.04	8.08	0.00	1.906	9.97	0.00	4.4	95.6	0.0	0.09	2.08	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7RZV	24779	2024-07-18	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	7XL4	33272	2024-07-24	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	3.8	0.004	0.79	1.0	0.04	14.16	0.00	1.925	9.24	3.60	5.5	94.5	0.0	-1.25	1.32	0.81	0.80	1.30	24560	3479	8	0	3	0	0	logfile
✔	8G3K	29700	2024-07-18	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.003	0.48	0.0	0.03	17.08	0.00	2.386	4.15	2.88	0.7	99.3	0.0	4.64	1.15	0.47	0.83	5.16	2244	285	2	0	0	0	0	logfile
✔	8C96	16503	2024-07-28	2023-01-21	4.43	5.03	4.86	4.4	0.001	0.36	0.0	0.03	22.54	0.00	1.928	6.57	0.08	3.8	96.1	0.1	0.57	0.83	0.79	—	4.4	0.006	0.74	0.0	0.04	24.03	0.01	1.999	39.57	0.00	8.3	91.7	0.0	-1.84	0.94	0.84	0.85	—	44214	1607	16	1475	0	0	0	logfile
✔	8HiA	34813	2024-07-19	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.009	0.98	0.0	0.05	15.73	0.01	2.082	32.36	4.76	19.0	81.0	0.0	-5.53	12.59	0.68	0.24	—	7200	460	20	0	0	0	3660	logfile

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