Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEH	20020	2024-07-26	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6PoM	20416	2024-07-19	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.23	0.0	0.06	27.09	0.01	1.945	59.78	0.00	0.0	0.0	0.0	—	1.74	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7URM	26714	2024-07-18	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	6oDJ	20021	2024-07-24	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7SAM	24952	2024-07-19	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	28.37	0.01	1.818	83.35	0.00	0.0	0.0	0.0	—	5.72	0.95	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7YC8	33736	2024-07-19	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.81	0.0	0.04	27.57	0.01	1.977	68.78	0.00	0.0	0.0	0.0	—	1.24	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	6o1o	0454	2024-07-21	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	17.09	0.00	1.997	30.54	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	7XD3	33134	2024-07-19	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	24.40	0.01	1.702	16.08	0.00	0.0	0.0	0.0	—	1.79	0.87	0.81	—	9062	0	2	423	28	0	0	logfile
✔	7URi	26713	2024-07-18	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7UVT	26816	2024-07-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.99	0.01	1.910	21.84	0.00	0.0	0.0	0.0	—	0.48	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	7XD5	33136	2024-07-19	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.65	0.0	0.04	23.41	0.00	1.948	6.18	0.00	0.0	0.0	0.0	—	1.38	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7YGD	33816	2024-07-19	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.77	0.0	0.04	25.31	0.01	1.828	33.22	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	4	389	6	0	0	logfile
✔	6X64	22069	2024-07-21	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7UR5	26705	2024-07-19	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.89	0.0	0.05	27.26	0.01	2.007	16.72	0.00	0.0	0.0	0.0	—	1.85	0.08	0.67	—	5709	0	3	270	0	0	0	logfile
✔	7XD6	33137	2024-07-20	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	23.79	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.005	0.68	0.0	0.04	23.96	0.00	1.878	7.75	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7XD7	33138	2024-07-19	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.005	0.65	0.0	0.04	23.37	0.00	1.906	8.42	0.00	0.0	0.0	0.0	—	1.99	0.92	0.92	—	8693	0	2	405	30	0	0	logfile
✔	7XD4	33135	2024-07-19	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.80	0.0	0.04	24.55	0.01	1.741	18.29	0.00	0.0	0.0	0.0	—	1.76	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	7YCG	33738	2024-07-19	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.03	24.51	0.00	1.855	32.20	0.00	0.0	0.0	0.0	—	0.31	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	7YG8	33811	2024-07-19	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.68	0.0	0.04	24.64	0.00	1.811	20.26	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7RX4	24724	2024-07-21	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.55	0.0	0.04	16.77	0.00	2.336	5.72	4.21	0.0	100.0	0.0	6.16	0.48	0.61	0.80	0.84	13560	1740	60	0	0	0	0	logfile

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