Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WL1	21815	2024-07-21	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.003	0.48	0.0	0.03	16.55	0.00	2.272	7.01	4.66	0.0	100.0	0.0	6.35	0.72	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7RX5	24725	2024-07-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.30	0.0	0.03	13.59	0.00	2.262	5.92	0.00	0.0	100.0	0.0	5.26	0.25	0.71	0.87	2.89	9120	1160	40	0	0	0	0	logfile
✔	7RX4	24724	2024-07-21	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.55	0.0	0.04	16.77	0.00	2.336	5.72	4.21	0.0	100.0	0.0	6.16	0.48	0.61	0.80	0.84	13560	1740	60	0	0	0	0	logfile
✔	6PoM	20416	2024-07-19	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.23	0.0	0.06	27.09	0.01	1.945	59.78	0.00	0.0	0.0	0.0	—	1.74	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	6WL9	21818	2024-07-23	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.81	0.0	0.04	15.01	0.00	2.221	14.15	0.00	0.0	100.0	0.0	2.92	1.82	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	6X64	22069	2024-07-21	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7SAM	24952	2024-07-19	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	28.37	0.01	1.818	83.35	0.00	0.0	0.0	0.0	—	5.72	0.95	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7YC8	33736	2024-07-19	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.81	0.0	0.04	27.57	0.01	1.977	68.78	0.00	0.0	0.0	0.0	—	1.24	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7URi	26713	2024-07-18	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6o1o	0454	2024-07-21	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	17.09	0.00	1.997	30.54	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6WL7	21816	2024-07-26	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.50	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.9	0.005	0.83	0.0	0.04	17.52	0.00	2.175	13.93	6.54	0.0	100.0	0.0	5.90	1.40	0.79	0.87	1.96	34350	4350	150	0	0	0	0	logfile
✔	7XD3	33134	2024-07-19	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	24.40	0.01	1.702	16.08	0.00	0.0	0.0	0.0	—	1.79	0.87	0.81	—	9062	0	2	423	28	0	0	logfile
✔	7YG8	33811	2024-07-19	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.68	0.0	0.04	24.64	0.00	1.811	20.26	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	6oEH	20020	2024-07-26	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7URM	26714	2024-07-18	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7YCG	33738	2024-07-19	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.66	0.0	0.03	24.51	0.00	1.855	32.20	0.00	0.0	0.0	0.0	—	0.31	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	6oDJ	20021	2024-07-24	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	8HD7	34671	2024-07-19	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.006	0.73	0.0	0.04	23.95	0.01	1.797	14.26	0.00	0.0	0.0	0.0	—	1.52	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	7YGD	33816	2024-07-19	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.77	0.0	0.04	25.31	0.01	1.828	33.22	0.00	0.0	0.0	0.0	—	1.50	0.91	0.88	—	8313	0	4	389	6	0	0	logfile
✔	7QV6	14168	2024-07-18	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.40	0.0	0.06	11.88	0.00	2.320	1.65	0.79	0.0	100.0	0.0	0.64	0.40	0.40	0.86	5.54	4842	306	18	0	0	0	2556	logfile

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