Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PTQ	13633	2024-07-22	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.69	0.0	0.04	27.08	0.00	1.850	44.28	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	6YoV	10864	2024-07-20	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.19	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.9	0.006	0.74	0.0	0.04	26.27	0.00	2.053	13.40	4.34	2.2	97.8	0.0	2.02	1.23	0.89	0.86	1.87	12298	898	18	262	8	0	0	logfile
✔	7XSL	33426	2024-07-20	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.81	0.01	1.808	34.33	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7YCi	33740	2024-07-19	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.006	0.66	0.0	0.04	24.64	0.00	1.869	26.47	0.00	0.0	0.0	0.0	—	0.94	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7XSN	33428	2024-07-19	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.73	0.00	2.107	21.06	0.00	0.0	0.0	0.0	—	0.26	0.92	0.88	—	8279	0	1	387	0	0	0	logfile
✔	7ZJ5	14741	2024-07-20	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	26.06	0.01	1.650	65.92	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	2	374	1	0	4030	logfile
✔	8HD6	34670	2024-07-19	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.72	0.0	0.04	24.88	0.01	1.773	21.76	0.00	0.0	0.0	0.0	—	2.20	0.91	0.81	—	8980	0	2	419	25	0	0	logfile
✔	6UES	20755	2024-07-18	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.89	0.0	0.04	27.66	0.01	1.797	37.47	0.00	0.0	0.0	0.0	—	0.86	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	8i7N	35223	2024-07-19	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.51	0.0	0.03	23.01	0.00	1.946	5.19	0.00	0.0	0.0	0.0	—	0.93	0.87	0.90	—	8979	0	2	418	29	0	0	logfile
✔	6ULC	20813	2024-07-23	2019-10-07	4.6	4.75	—	4.5	0.006	0.94	0.0	0.07	21.25	0.00	2.086	5.68	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.004	0.94	0.0	0.06	13.83	0.00	2.068	22.25	0.00	13.4	86.6	0.0	-3.07	0.84	0.79	0.71	—	19968	2301	46	0	142	0	0	logfile
✔	7YCH	33739	2024-07-19	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	24.32	0.00	1.812	30.74	0.00	0.0	0.0	0.0	—	0.91	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7R6L	24281	2024-07-19	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.59	0.01	1.877	7.46	0.00	0.0	0.0	0.0	—	0.08	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7XSK	33425	2024-07-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSM	33427	2024-07-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.67	0.01	1.798	49.89	0.00	0.0	0.0	0.0	—	1.72	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7EZ0	31385	2024-07-19	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.60	0.0	0.03	23.78	0.00	1.901	7.94	0.00	0.0	0.0	0.0	—	1.92	0.76	0.85	—	8306	0	2	387	27	0	0	logfile
✔	7RZV	24779	2024-07-18	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	8CZi	27098	2024-07-18	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	6LHW	0901	2024-07-21	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6UET	20756	2024-07-18	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.99	0.0	0.05	28.06	0.01	1.754	53.19	0.00	0.0	0.0	0.0	—	0.74	0.65	0.79	—	3869	0	2	119	1	0	1291	logfile
✔	7XD4	33135	2024-07-19	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.80	0.0	0.04	24.55	0.01	1.741	18.29	0.00	0.0	0.0	0.0	—	1.76	0.87	0.79	—	9062	0	2	423	28	0	0	logfile

• Page 1 of 579
• next →