Table showing results for July 2024

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WPT	21865	2024-07-24	2020-04-27	3.7	3.95	3.74	3.8	0.012	1.35	0.0	0.09	10.41	0.01	1.930	0.48	0.09	1.9	98.0	0.1	0.62	0.76	0.76	2.77	3.8	0.004	0.64	0.0	0.04	12.56	0.00	2.173	7.46	1.81	3.8	96.2	0.1	0.48	1.26	0.78	0.80	2.50	24326	3277	22	0	65	0	0	logfile
✔	7V1Y	31630	2024-07-20	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.003	0.59	4.0	0.04	16.17	0.00	2.104	4.45	1.42	3.9	96.1	0.0	1.55	1.22	0.69	0.88	3.16	12524	1588	8	0	0	0	0	logfile
✘	8WQV	37755	2024-07-26	2023-10-12	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32737	3937	48	0	24	0	0	logfile
✔	7RAN	24378	2024-07-19	2021-07-02	3.45	3.40	—	3.5	0.003	0.62	0.0	0.05	12.45	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.002	0.55	0.0	0.04	14.69	0.00	2.103	4.96	1.90	2.6	97.4	0.0	0.93	0.37	0.75	0.83	2.41	8523	1120	6	0	1	0	0	logfile
✔	6YTo	10920	2024-07-27	2020-04-24	4.24	4.32	4.19	4.3	0.005	0.70	0.0	0.04	13.41	0.00	2.282	10.19	0.00	1.9	98.1	0.0	-0.08	0.67	0.83	—	4.3	0.003	0.63	0.0	0.04	13.37	0.00	2.243	8.47	0.00	3.0	97.0	0.0	2.78	0.70	0.67	0.83	—	41620	5340	20	0	0	0	0	logfile
✔	7YFi	33791	2024-07-24	2022-07-08	3.3	3.42	3.48	3.3	0.004	0.70	0.0	0.05	17.74	0.01	2.097	8.86	1.20	6.1	93.5	0.4	-0.21	0.84	0.77	1.68	3.0	0.003	0.59	0.0	0.04	16.82	0.00	2.127	8.70	2.33	6.9	92.9	0.2	0.27	1.34	0.87	0.83	2.23	24135	2980	19	0	45	0	0	logfile
✔	8J0F	35901	2024-07-19	2023-04-10	3.3	4.15	3.22	3.8	0.009	1.06	0.0	0.05	18.09	0.01	2.242	17.62	2.13	1.8	98.2	0.0	0.30	0.81	0.82	1.63	3.8	0.003	0.74	0.0	0.04	17.21	0.00	2.109	8.86	2.23	2.1	97.9	0.0	2.35	1.25	0.81	0.85	1.10	8932	1144	12	0	8	0	0	logfile
✔	7KRJ	23004	2024-07-24	2020-11-20	2.56	3.00	2.65	3.0	0.026	1.84	0.0	0.11	11.32	0.01	1.787	0.78	0.07	1.9	98.0	0.1	0.71	0.88	0.88	3.95	2.9	0.004	0.67	0.0	0.04	14.62	0.00	1.922	4.64	0.40	3.7	96.3	0.0	1.09	1.13	0.87	0.89	3.60	26866	1642	7	0	5	0	13407	logfile
✔	8HiA	34813	2024-07-19	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.009	0.98	0.0	0.05	15.73	0.01	2.082	32.36	4.76	19.0	81.0	0.0	-5.53	12.59	0.68	0.24	—	7200	460	20	0	0	0	3660	logfile
✔	7WJM	32545	2024-07-21	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.53	0.0	0.04	14.21	0.00	2.269	4.27	2.88	4.2	95.7	0.1	2.19	3.22	0.71	0.87	1.98	12970	1614	2	0	0	0	0	logfile
✔	7KY8	23071	2024-07-20	2020-12-07	3.85	3.91	—	3.9	0.005	0.74	0.0	0.05	15.27	0.00	2.208	13.05	0.00	8.4	91.6	0.0	-1.28	0.70	0.84	2.33	3.9	0.002	0.60	0.0	0.04	15.97	0.00	2.247	10.67	2.43	7.4	92.6	0.0	-0.78	0.33	0.68	0.84	2.06	10520	1274	8	0	19	0	0	logfile
✔	7E83	31009	2024-07-20	2021-02-28	3.1	3.20	2.96	3.3	0.003	0.61	0.0	0.04	15.41	0.00	2.153	7.05	0.00	9.0	90.7	0.3	-0.08	0.71	0.80	3.01	3.2	0.003	0.61	0.0	0.04	17.08	0.00	2.188	8.18	0.96	8.1	91.6	0.3	0.25	0.48	0.69	0.82	2.72	12704	1544	8	0	0	0	0	logfile
✔	6XGC	22180	2024-07-22	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	8.17	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.67	0.0	0.04	11.31	0.00	2.176	11.66	0.05	3.8	96.2	0.0	-0.24	1.32	0.81	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7DSC	30830	2024-07-20	2020-12-30	3.5	3.66	—	3.5	0.004	0.56	0.0	0.04	12.77	0.00	2.299	4.53	0.00	1.6	98.4	0.0	-0.35	0.53	0.73	2.13	3.5	0.003	0.85	0.0	0.04	16.20	0.00	2.238	12.06	4.06	2.8	97.2	0.0	1.97	1.41	0.57	0.76	2.13	11848	1528	16	0	8	0	0	logfile
✔	7X24	32957	2024-07-20	2022-02-25	3.4	2.84	3.24	3.2	0.006	1.21	0.0	0.05	15.94	0.01	2.080	8.34	0.00	4.0	96.0	0.0	0.37	0.65	0.82	2.68	3.2	0.004	0.61	0.0	0.04	16.84	0.00	2.009	8.87	2.02	4.8	95.2	0.0	0.60	0.30	0.66	0.84	2.43	10286	1263	4	0	14	0	0	logfile
✔	7E84	31010	2024-07-22	2021-02-28	3.1	3.20	3.04	3.3	0.002	0.53	0.0	0.04	14.85	0.00	2.263	6.57	0.00	7.0	92.8	0.2	-0.03	0.62	0.67	3.16	3.2	0.004	0.61	0.0	0.04	16.50	0.00	2.206	9.34	1.63	7.5	92.4	0.2	0.61	0.49	0.67	0.76	2.52	20580	2548	8	0	0	0	0	logfile
✔	5oJS	3824	2024-07-25	2017-07-24	3.7	3.84	—	3.7	0.007	1.43	0.0	0.07	13.41	0.01	2.211	8.29	2.09	14.8	84.6	0.6	-5.58	0.80	0.75	1.62	3.7	0.004	0.90	0.0	0.05	16.22	0.01	2.111	15.91	3.62	13.4	86.5	0.2	-1.91	0.75	0.81	0.75	0.83	28407	3473	1	0	0	0	0	logfile
✔	7F3F	31433	2024-07-22	2021-06-16	3.1	3.20	3.04	3.3	0.002	0.62	2.0	0.04	14.67	0.00	2.268	7.16	0.14	7.3	92.3	0.3	0.02	0.66	0.74	2.70	3.2	0.006	0.71	0.0	0.04	16.39	0.00	2.182	9.66	1.63	7.9	91.9	0.2	0.34	0.50	0.67	0.77	2.52	20580	2548	8	0	0	0	0	logfile
✘	7MiM	23856	2024-07-23	2021-04-17	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22728	2560	8	0	40	0	0	logfile
✔	8HGG	34738	2024-07-24	2022-11-14	3.64	3.02	3.51	3.5	0.003	0.62	0.0	0.05	11.94	0.01	2.296	4.09	5.46	3.4	96.6	0.0	-1.38	0.66	0.66	2.36	3.4	0.004	0.75	1.0	0.05	14.50	0.00	2.136	9.45	3.24	5.9	94.1	0.0	-1.14	0.59	0.68	0.71	2.41	25404	3238	6	0	2	0	0	logfile

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