Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YUX	34114	2024-07-27	2022-08-18	3.8	4.07	3.93	3.9	0.003	0.70	0.0	0.05	13.37	0.01	2.071	14.84	0.26	6.4	93.6	0.1	-1.09	0.75	0.68	0.54	3.9	0.004	0.71	0.0	0.04	15.75	0.00	2.101	18.71	2.44	7.5	92.4	0.0	-1.00	0.44	0.76	0.72	0.45	36585	4638	11	0	5	0	0	logfile
✔	8T07	40937	2024-07-19	2023-05-31	3.38	3.84	3.51	3.8	0.014	1.71	0.0	0.08	12.73	0.00	2.368	0.90	0.27	3.8	96.2	0.0	-1.32	0.52	0.76	2.89	3.8	0.002	0.57	0.0	0.04	15.06	0.00	2.232	7.02	1.78	2.5	97.5	0.0	1.40	0.56	0.66	0.83	1.11	6710	852	8	0	2	0	0	logfile
✔	8F0o	28775	2024-07-24	2022-11-03	2.99	4.40	3.26	3.0	0.005	0.80	0.0	0.05	17.63	0.01	2.274	3.93	0.00	5.1	94.9	0.0	-2.73	0.81	0.83	1.70	3.0	0.003	0.69	0.0	0.04	16.11	0.00	2.155	11.65	0.97	4.9	95.1	0.0	0.35	0.53	0.82	0.85	1.51	24030	2968	16	0	38	0	0	logfile
✔	8SYo	40886	2024-07-20	2023-05-25	2.94	2.44	—	2.1	0.004	0.62	0.0	0.04	13.19	0.00	2.182	9.38	0.00	2.7	97.3	0.0	0.88	0.77	0.76	2.68	2.0	0.005	0.77	0.0	0.05	17.07	0.00	2.174	13.83	2.57	3.4	96.6	0.0	1.22	1.28	0.78	0.78	2.49	10069	1259	3	0	0	0	0	logfile
✔	7Y53	33611	2024-07-28	2022-06-16	3.61	4.15	3.76	4.0	0.004	0.71	0.0	0.05	15.24	0.01	2.119	10.11	0.00	8.6	91.0	0.4	-0.33	0.77	0.78	1.33	4.0	0.003	0.70	0.0	0.04	16.55	0.00	2.085	11.57	1.37	7.8	91.8	0.4	-0.09	1.19	0.78	0.80	0.93	42966	5382	16	0	12	0	0	logfile
✘	8TTB	41604	2024-07-23	2023-08-13	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21924	1376	5	0	2	0	10922	logfile
✔	8oXM	17265	2024-07-28	2023-05-02	3.3	3.96	3.58	3.6	0.002	0.50	0.0	0.04	14.09	0.00	2.097	8.21	0.00	2.1	97.9	0.0	2.04	0.78	0.77	0.86	3.6	0.003	0.66	0.0	0.04	16.04	0.00	1.918	12.16	0.98	2.6	97.4	0.0	1.97	2.34	0.81	0.84	0.95	44174	5510	6	0	6	0	0	logfile
✔	8F1D	28795	2024-07-21	2022-11-04	2.94	3.13	2.94	3.2	0.004	0.51	0.0	0.04	10.40	0.00	2.321	4.94	0.59	4.4	95.6	0.0	1.12	0.43	0.66	4.21	3.1	0.003	0.60	0.0	0.04	13.45	0.00	2.357	4.98	1.56	5.0	95.0	0.0	1.04	0.42	0.66	0.85	3.19	12888	1576	8	0	12	0	0	logfile
✔	8T7H	41092	2024-07-21	2023-06-20	3.3	2.38	—	3.4	0.003	0.62	0.0	0.04	13.36	0.00	2.217	7.98	0.00	4.3	95.7	0.0	0.31	0.72	0.68	2.37	3.4	0.004	0.63	0.0	0.05	15.30	0.00	2.139	9.25	2.14	4.8	95.2	0.0	0.25	0.31	0.78	0.78	2.09	13100	1794	6	0	2	0	0	logfile
✔	8oDT	16816	2024-07-22	2023-03-09	4.2	4.35	4.11	4.2	0.006	0.71	0.0	0.04	12.87	0.00	1.882	17.39	3.61	2.8	97.1	0.1	1.77	0.57	0.66	—	4.2	0.005	0.63	0.0	0.04	12.67	0.00	1.913	17.13	0.00	3.4	96.6	0.0	1.87	3.65	0.59	0.67	—	18800	1188	7	0	0	0	9496	logfile
✔	8TPA	41471	2024-07-22	2023-08-04	3.0	3.16	3.09	3.2	0.022	1.81	0.0	0.11	10.43	0.01	2.338	1.47	0.00	1.3	98.7	0.0	1.11	0.73	0.82	4.65	3.2	0.006	0.89	1.0	0.05	15.38	0.00	2.142	11.32	2.83	3.1	96.9	0.0	0.07	1.34	0.73	0.85	3.34	17286	2154	18	0	18	0	0	logfile
✔	8PD8	17605	2024-07-22	2023-06-12	3.3	2.43	3.21	2.1	0.005	0.85	0.0	0.05	13.01	0.01	2.240	6.27	0.00	2.4	97.6	0.0	0.77	0.68	0.71	1.97	2.1	0.003	0.61	0.0	0.04	15.80	0.00	2.182	7.88	2.23	1.3	98.7	0.0	2.22	1.19	0.77	0.78	1.58	16122	2036	4	0	2	0	0	logfile
✔	8G3G	29695	2024-07-19	2023-02-07	3.5	3.73	2.78	3.7	0.007	1.15	2.0	0.08	19.09	0.01	2.216	12.71	9.45	8.0	92.0	0.0	-2.51	0.76	0.73	1.09	3.6	0.006	0.90	0.0	0.05	18.00	0.01	2.053	18.61	10.82	9.7	90.3	0.0	-2.51	1.16	0.77	0.76	1.08	7020	900	10	0	0	0	0	logfile
✔	9EWQ	50022	2024-07-20	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile
✔	8K3W	36863	2024-07-20	2023-07-17	2.91	3.20	3.02	3.2	0.009	1.12	0.0	0.07	17.13	0.01	2.285	10.08	2.89	3.7	96.3	0.0	-0.02	0.57	0.73	2.43	3.3	0.004	0.59	0.0	0.04	17.06	0.00	2.185	6.06	4.60	3.7	96.3	0.0	1.88	0.67	0.59	0.78	3.09	10916	1388	4	0	6	0	0	logfile
✔	8SDA	40350	2024-07-19	2023-04-06	3.32	3.41	3.16	3.4	0.008	1.11	0.0	0.04	15.99	0.00	2.225	15.46	0.00	2.7	97.3	0.0	1.62	0.63	0.81	2.02	3.5	0.003	0.57	0.0	0.04	16.25	0.00	2.164	7.90	2.44	2.2	97.8	0.0	3.11	0.94	0.65	0.85	1.47	7414	939	8	0	19	0	0	logfile
✔	8i9S	35282	2024-07-19	2023-02-07	3.26	3.55	3.33	3.6	0.002	0.56	0.0	0.04	12.77	0.00	2.260	5.60	0.00	4.5	95.5	0.0	0.32	0.68	0.75	2.20	3.6	0.004	0.66	0.0	0.04	15.09	0.00	2.078	5.35	1.89	5.1	94.9	0.0	0.60	1.52	0.72	0.81	2.24	8123	1113	5	0	0	0	0	logfile
✔	7YUV	34112	2024-07-22	2022-08-17	3.8	4.01	3.85	3.9	0.003	0.67	0.0	0.04	13.83	0.00	2.141	15.66	0.06	6.3	93.7	0.0	-1.33	0.74	0.66	0.61	3.9	0.004	0.73	0.0	0.05	15.83	0.00	2.051	19.44	2.26	7.5	92.5	0.0	-1.26	0.94	0.76	0.69	0.52	16657	2128	7	0	3	0	0	logfile
✔	7YUW	34113	2024-07-25	2022-08-18	3.6	3.93	3.81	3.8	0.004	0.76	0.0	0.05	12.96	0.01	2.142	16.22	0.15	8.2	91.7	0.1	-2.06	0.68	0.64	0.79	3.8	0.004	0.73	0.0	0.04	15.04	0.01	2.100	17.47	2.31	8.9	91.1	0.1	-1.57	0.44	0.70	0.70	0.39	30483	3865	9	0	4	0	0	logfile
✔	8Qi7	18436	2024-07-21	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.61	0.0	0.04	13.61	0.00	2.258	2.32	0.13	3.9	96.1	0.0	0.68	0.38	0.69	0.87	4.10	14609	1848	8	0	0	117	0	logfile

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