Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F0K	28759	2024-07-20	2022-11-03	1.9	1.70	1.92	1.9	0.004	0.59	0.0	0.04	14.28	0.01	2.252	4.34	0.91	1.2	98.8	0.0	-1.70	0.50	0.67	4.75	1.9	0.003	0.61	0.0	0.04	16.41	0.00	2.197	6.72	1.18	1.9	98.1	0.0	1.45	0.60	0.60	0.77	4.97	10553	1272	13	0	18	39	0	logfile
✔	7T2G	25612	2024-07-19	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.97	1.0	0.04	14.50	0.00	2.141	12.06	2.58	2.4	97.5	0.1	0.62	0.36	0.80	0.81	4.27	6922	898	5	0	3	8	0	logfile
✔	7VZ4	32220	2024-07-20	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	28.81	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.63	0.0	0.04	28.12	0.00	2.311	4.46	1.13	0.7	99.3	0.0	2.95	0.80	0.77	0.86	7.59	11843	746	10	290	0	0	0	logfile
✔	8P6Y	17511	2024-07-19	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.002	0.54	0.0	0.04	16.90	0.00	2.147	4.50	0.54	1.0	98.9	0.2	2.20	0.75	0.68	0.85	6.01	5266	630	7	0	3	158	0	logfile
✔	7QKW	14055	2024-07-18	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.60	0.00	2.475	2.77	2.54	5.4	94.6	0.0	-2.80	1.30	0.42	0.85	6.06	4707	306	6	0	0	0	2439	logfile
✔	8SRi	40732	2024-07-27	2023-05-05	2.73	1.75	—	2.9	0.011	1.65	20.0	0.08	13.48	0.01	2.066	3.30	0.33	3.2	96.8	0.0	0.53	0.58	0.65	1.85	2.9	0.004	0.64	0.0	0.04	15.55	0.00	1.892	8.11	2.11	3.8	96.2	0.1	0.71	1.80	0.64	0.75	1.94	40636	5472	8	0	36	0	0	logfile
✔	8Q98	18271	2024-07-19	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.49	0.0	0.05	13.57	0.00	2.336	2.28	0.51	0.2	99.8	0.0	-0.44	0.91	0.43	0.90	7.94	7032	450	6	0	0	0	3588	logfile
✔	8P79	17522	2024-07-19	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.77	0.00	2.176	5.11	0.54	1.6	98.2	0.2	1.91	1.15	0.68	0.77	6.30	5256	630	6	0	1	180	0	logfile
✘	7EFC	31083	2024-07-18	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4004	480	8	0	4	156	0	logfile
✔	8ooS	17027	2024-07-20	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.81	0.0	0.04	25.65	0.00	1.627	10.93	2.50	3.5	96.5	0.0	1.06	1.59	0.74	0.74	1.50	12307	966	10	217	3	0	0	logfile
✔	8P6V	17508	2024-07-19	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.58	0.0	0.04	16.74	0.00	2.106	6.06	2.17	1.6	98.2	0.2	1.68	0.77	0.64	0.77	5.25	5243	630	7	0	2	138	0	logfile
✔	8F0J	28758	2024-07-20	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.003	0.61	0.0	0.04	17.17	0.00	2.199	6.30	1.52	2.2	97.8	0.0	1.45	0.82	0.53	0.76	5.72	9678	1157	12	0	18	25	0	logfile
✔	7o6E	12738	2024-07-26	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.48	0.0	0.03	18.19	0.00	2.218	3.52	0.58	0.5	99.5	0.0	4.44	0.29	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	7EFD	31084	2024-07-18	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.003	0.71	0.0	0.04	14.51	0.00	1.848	6.17	0.00	4.4	95.6	0.0	0.99	0.47	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	8F2B	28812	2024-07-20	2022-11-07	2.0	1.79	2.02	1.9	0.004	0.55	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.002	0.57	0.0	0.04	15.69	0.00	2.220	5.81	1.23	2.5	97.5	0.0	1.43	0.95	0.55	0.75	5.01	10360	1273	13	0	16	31	0	logfile
✔	7PQU	13605	2024-07-20	2021-09-20	3.03	1.80	—	3.4	0.008	0.90	0.0	0.05	17.24	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.58	0.0	0.04	16.65	0.00	2.236	9.43	4.08	5.8	94.2	0.0	-0.23	0.98	0.75	0.79	2.61	10798	1312	12	0	8	14	0	logfile
✔	8ooA	17008	2024-07-19	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.59	0.0	0.04	28.25	0.00	2.142	8.18	2.71	1.5	98.5	0.0	2.17	1.02	0.77	0.76	2.43	8405	529	8	204	0	0	0	logfile
✔	8P77	17520	2024-07-19	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.005	0.67	0.0	0.04	17.08	0.01	2.123	7.39	1.08	1.5	98.4	0.2	1.65	0.73	0.68	0.80	5.63	5271	630	7	0	2	137	0	logfile
✔	7V66	31736	2024-07-26	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.61	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	8P6X	17510	2024-07-19	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	1.9	0.005	0.74	0.0	0.05	16.57	0.01	2.073	8.55	1.44	1.8	98.1	0.2	1.36	0.77	0.68	0.79	5.08	5284	631	7	0	2	144	0	logfile

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