Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2024-07-18	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.005	1.06	0.0	0.05	16.10	0.01	2.206	23.77	2.08	2.6	97.4	0.0	1.81	2.72	0.59	0.38	—	4926	636	5	0	0	0	0	logfile
✘	3A5X	1641	2024-07-18	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3J2P	5499	2024-07-20	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.91	0.0	0.04	18.21	0.00	1.845	75.65	11.64	20.7	75.5	3.8	-4.38	0.84	0.39	0.73	1.07	9890	1134	8	0	6	0	1086	logfile
✔	3J5P	5778	2024-07-22	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.4	0.003	0.87	0.0	0.04	17.26	0.00	2.115	16.80	3.55	5.2	94.8	0.0	0.65	1.16	0.73	0.79	0.38	18636	2324	8	0	44	0	0	logfile
✘	3J5Q	5776	2024-07-22	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	12	0	44	0	292	logfile
✔	3J5R	5777	2024-07-22	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.87	0.0	0.04	12.86	0.00	2.203	18.36	0.00	6.2	93.4	0.4	0.19	1.79	0.67	0.51	—	17564	2324	8	0	44	0	0	logfile
✔	3J63	5830	2024-07-20	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	54.83	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	1.00	0.0	0.04	19.21	0.00	2.205	15.46	8.22	1.3	98.7	0.0	-0.47	1.91	0.79	0.76	1.14	10590	1365	15	0	0	0	0	logfile
✔	3J6J	5925	2024-07-20	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.004	0.94	0.0	0.05	17.87	0.01	2.117	21.22	5.09	3.2	96.6	0.3	0.50	2.82	0.88	0.88	1.90	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2024-07-28	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	10.65	0.01	1.279	19.23	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.004	0.90	1.0	0.05	15.22	0.01	1.930	11.78	3.67	11.1	88.3	0.7	-2.51	2.89	0.55	0.74	1.63	42575	5300	10	0	0	0	0	logfile
✔	3J7H	5995	2024-07-26	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	132.80	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.005	0.76	0.0	0.04	17.51	0.00	2.008	14.60	5.58	3.8	96.2	0.0	-0.11	1.64	0.79	0.87	2.57	32828	4088	8	0	4	0	0	logfile
✔	3J89	6123	2024-07-19	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.46	0.00	2.181	8.86	5.51	0.4	99.6	0.0	3.23	1.98	0.81	0.79	0.27	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2024-07-21	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.005	0.82	0.0	0.05	16.85	0.00	1.876	16.77	6.15	7.8	91.4	0.8	-2.15	0.48	0.72	0.83	1.82	15800	1835	12	0	280	0	0	logfile
✔	3J8i	6179	2024-07-21	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.89	0.0	0.05	14.26	0.00	1.992	18.38	0.00	10.3	88.5	1.2	-2.04	1.31	0.65	0.72	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2024-07-23	2014-12-05	4.2	2.69	—	3.1	0.009	1.97	0.0	0.07	17.14	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.6	0.003	0.79	0.0	0.04	14.81	0.01	1.705	16.21	0.05	4.7	94.7	0.5	0.55	2.62	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✘	3J9C	6224	2024-07-23	2014-12-25	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23296	2961	14	0	14	0	0	logfile
✔	3J9D	6239	2024-07-19	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.82	0.0	0.04	17.81	0.00	2.186	15.94	5.11	6.7	92.7	0.5	-1.39	2.36	0.75	0.84	2.66	6086	746	2	0	1	0	0	logfile
✔	3J9E	6240	2024-07-18	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.77	0.0	0.04	17.77	0.00	2.236	10.82	4.58	7.8	91.7	0.6	0.72	1.59	0.73	0.86	3.06	4098	520	1	0	0	0	0	logfile
✔	3J9J	5778	2024-07-22	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.004	0.65	0.0	0.04	15.77	0.00	1.878	14.85	1.30	6.9	92.8	0.3	2.24	3.87	0.59	0.76	2.25	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2024-07-22	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.1	0.004	0.95	0.0	0.04	14.03	0.00	2.124	18.39	0.00	9.4	89.7	0.9	-1.66	1.17	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✘	3J9S	6272	2024-07-20	2015-02-19	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile

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