Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L49	23158	2024-07-20	2020-12-18	3.1	3.16	—	3.1	0.005	0.95	0.0	0.06	21.43	0.01	2.220	6.19	0.00	8.6	91.4	0.0	-3.90	0.74	0.76	2.18	3.2	0.003	0.54	0.0	0.04	21.31	0.00	2.167	12.11	2.00	7.0	93.0	0.0	-0.53	1.17	0.76	0.82	2.82	12414	1041	8	191	4	0	0	logfile
✔	6YLE	10836	2024-07-21	2020-04-07	3.3	3.50	3.37	3.4	0.009	1.05	0.0	0.06	16.80	0.01	1.910	4.05	0.28	1.5	98.5	0.0	-3.17	0.72	0.82	3.17	3.4	0.005	0.68	0.0	0.05	17.21	0.00	2.163	7.92	2.94	6.0	94.0	0.0	0.03	0.70	0.73	0.85	2.62	15345	1930	5	0	0	0	0	logfile
✔	6P6W	20265	2024-07-19	2019-06-04	4.0	4.40	—	4.4	0.005	1.00	0.0	0.06	15.27	0.01	2.265	5.77	0.60	7.5	92.5	0.0	-5.12	0.72	0.74	—	4.4	0.004	0.98	0.0	0.05	17.03	0.00	2.151	20.59	4.31	6.8	93.2	0.0	-0.08	0.83	0.72	0.75	—	7468	916	4	0	0	0	0	logfile
✔	7WVY	32862	2024-07-19	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.20	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.004	0.64	0.0	0.04	15.75	0.00	2.143	12.38	3.20	2.3	97.7	0.0	0.56	0.57	0.61	0.80	2.90	7094	922	5	0	0	0	0	logfile
✔	7VHQ	32003	2024-07-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.003	0.60	0.0	0.04	15.58	0.00	2.142	9.26	1.77	3.5	96.5	0.0	2.07	1.13	0.74	0.84	1.52	16650	2076	12	0	0	0	0	logfile
✔	6Bo8	7120	2024-07-22	2017-11-18	3.6	3.64	—	3.6	0.008	1.19	0.0	0.06	10.83	0.01	2.286	7.28	0.97	11.0	89.0	0.0	-4.49	0.56	0.62	1.58	3.6	0.003	0.79	0.0	0.04	15.96	0.00	2.154	11.80	3.15	10.4	89.6	0.0	-0.45	1.31	0.74	0.80	1.83	19048	2372	4	0	0	0	0	logfile
✔	7BGE	12179	2024-07-22	2021-01-06	3.6	3.70	—	3.6	0.006	1.33	3.0	0.06	22.86	0.01	2.296	3.75	2.13	10.3	89.6	0.1	-5.86	0.82	0.79	1.70	3.6	0.005	0.73	0.0	0.04	22.54	0.01	2.094	16.88	4.26	12.3	87.7	0.0	-2.03	0.65	0.84	0.83	1.83	16988	879	9	465	0	0	0	logfile
✔	5Z1F	6875	2024-07-19	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.81	0.0	0.04	11.74	0.01	2.234	14.96	0.00	6.4	93.6	0.0	0.10	1.39	0.59	0.77	—	8480	1202	2	0	0	0	0	logfile
✔	6o7i	0642	2024-07-23	2019-03-07	3.2	3.32	—	3.3	0.012	1.17	0.0	0.07	13.66	0.01	1.331	7.58	1.03	8.2	91.8	0.0	-4.51	0.71	0.77	3.69	3.3	0.002	0.61	0.0	0.04	16.05	0.00	2.186	8.72	1.64	5.4	94.6	0.0	-0.97	1.70	0.74	0.83	2.60	20276	2377	16	49	97	0	0	logfile
✔	6L7A	0841	2024-07-22	2019-11-01	3.38	3.58	—	3.5	0.005	0.84	0.0	0.05	14.70	0.01	2.395	4.54	0.42	5.1	94.9	0.0	-4.67	0.75	0.84	2.76	3.5	0.004	0.64	0.0	0.04	16.45	0.00	2.108	9.15	2.88	4.1	95.9	0.0	0.19	0.54	0.73	0.84	1.95	19701	2538	18	0	0	0	0	logfile
✔	5iYD	8138	2024-07-28	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.39	0.01	0.526	22.15	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.005	0.99	0.0	0.05	19.53	0.01	1.784	24.35	3.97	9.2	90.1	0.7	-1.10	1.15	0.80	0.80	1.11	46709	5407	31	166	13	0	0	logfile
✔	6KF3	9960	2024-07-24	2019-07-06	3.9	4.00	3.77	4.0	0.008	1.33	1.0	0.07	12.71	0.01	2.102	4.54	4.74	13.7	85.5	0.8	-5.00	0.71	0.74	1.75	4.0	0.003	0.79	0.0	0.05	15.78	0.01	1.982	11.22	3.58	11.6	88.3	0.1	-2.44	2.20	0.72	0.76	1.16	26375	3297	15	0	6	0	0	logfile
✔	7LHG	23339	2024-07-20	2021-01-23	3.8	4.27	—	4.2	0.008	1.67	1.0	0.08	14.92	0.01	2.325	7.96	0.00	5.3	94.6	0.1	-4.42	0.73	0.76	1.20	4.1	0.003	0.76	0.0	0.05	16.35	0.00	2.096	15.78	3.94	7.8	92.2	0.0	-2.57	1.28	0.74	0.79	1.13	11592	1492	4	0	0	0	0	logfile
✔	6KU9	0776	2024-07-20	2019-08-31	2.67	2.78	2.55	2.7	0.005	0.90	0.0	0.06	14.50	0.01	2.258	3.68	5.48	6.5	93.1	0.3	-2.36	0.76	0.86	3.72	2.7	0.003	0.60	0.0	0.04	15.52	0.00	2.250	5.32	2.55	4.6	95.4	0.0	-0.67	1.62	0.76	0.88	3.47	11739	1461	3	0	0	0	0	logfile
✔	8oPA	17046	2024-07-26	2023-04-07	3.34	3.71	3.54	3.7	0.006	0.86	0.0	0.05	16.75	0.00	2.391	7.55	0.00	5.0	95.0	0.0	-2.04	0.66	0.84	2.44	3.7	0.003	0.70	0.0	0.04	18.16	0.00	2.124	7.24	2.51	4.6	95.4	0.0	-0.63	0.57	0.66	0.83	2.10	34992	4344	24	0	0	0	0	logfile
✔	7VQo	32091	2024-07-27	2021-10-20	2.19	3.23	2.29	3.0	0.008	0.75	0.0	0.05	17.42	0.00	1.865	12.17	3.25	9.3	90.7	0.0	-1.44	0.58	0.80	3.45	3.0	0.003	0.61	0.0	0.04	17.35	0.00	1.978	10.73	2.81	7.7	92.3	0.0	-0.78	0.28	0.57	0.79	3.36	38640	4720	12	0	4	688	0	logfile
✔	8ATD	15646	2024-07-22	2022-08-23	3.1	3.30	3.10	3.3	0.002	0.52	0.0	0.04	10.64	0.00	2.129	4.41	0.00	2.9	96.7	0.3	0.32	0.76	0.84	3.84	3.3	0.006	0.64	0.0	0.05	13.64	0.00	2.135	6.80	2.17	3.7	96.0	0.3	-0.25	0.35	0.77	0.86	3.30	19653	2586	6	0	0	0	0	logfile
✔	6MUP	9251	2024-07-21	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.82	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.004	0.66	0.0	0.04	26.52	0.00	2.116	12.47	2.05	8.4	91.6	0.0	-1.99	0.72	0.75	0.79	1.54	15803	1224	14	294	0	0	0	logfile
✔	8H1J	34428	2024-07-19	2022-10-03	3.1	3.36	3.20	3.3	0.005	0.53	0.0	0.03	22.06	0.00	2.232	8.41	5.19	1.7	98.3	0.0	2.19	0.62	0.67	2.02	3.3	0.004	0.53	0.0	0.03	22.24	0.00	2.149	7.92	4.55	2.5	97.5	0.0	1.16	0.50	0.73	0.80	1.48	5773	362	5	134	1	0	0	logfile
✔	7CAL	30334	2024-07-21	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.99	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.003	0.71	0.0	0.04	16.14	0.00	2.255	5.81	3.65	11.5	88.2	0.2	-1.60	1.51	0.70	0.82	2.56	14064	1776	8	0	4	0	0	logfile

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