Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH6	14725	2024-07-18	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.1	0.004	0.72	0.0	0.04	16.92	0.00	2.204	14.61	7.56	6.0	94.0	0.0	1.33	1.13	0.54	0.74	1.00	3771	478	2	0	1	0	0	logfile
✔	8XCS	38253	2024-07-18	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.003	0.52	0.0	0.04	16.56	0.00	2.267	5.41	1.47	2.4	97.6	0.0	1.77	0.89	0.49	0.92	5.48	3360	418	2	0	3	20	0	logfile
✔	8XD1	38262	2024-07-18	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.003	0.57	0.0	0.04	17.35	0.01	2.188	6.23	1.18	3.4	96.6	0.0	1.57	0.47	0.42	0.89	2.86	3307	416	2	0	1	9	0	logfile
✔	8XD6	38267	2024-07-18	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.54	0.0	0.04	16.53	0.00	2.248	5.68	0.88	1.4	98.6	0.0	1.57	0.43	0.49	0.93	4.82	3402	419	2	0	4	44	0	logfile
✔	8iJD	35485	2024-07-19	2023-02-27	3.25	3.91	1.15	3.7	0.008	1.20	10.0	0.07	16.92	0.01	1.812	17.05	2.30	5.8	94.2	0.0	-0.43	0.69	0.82	1.82	3.7	0.003	0.77	0.0	0.05	16.93	0.00	2.129	14.88	3.94	4.7	95.2	0.1	0.19	0.42	0.71	0.85	1.92	8724	1136	6	0	1	0	0	logfile
✔	8SPB	40678	2024-07-19	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.003	0.65	0.0	0.04	18.02	0.00	2.118	13.18	4.61	6.7	93.2	0.1	-1.20	0.99	0.48	0.75	0.99	6726	828	6	0	0	0	0	logfile
✔	8iJ3	35463	2024-07-19	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.004	0.63	0.0	0.04	17.64	0.00	2.112	6.65	4.92	5.1	94.8	0.1	0.23	0.28	0.73	0.87	2.60	8772	1134	5	0	0	0	0	logfile
✔	8ZNG	60270	2024-07-18	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.51	0.0	0.04	18.13	0.00	2.258	6.47	2.35	2.4	97.6	0.0	1.18	0.81	0.54	0.92	3.93	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2024-07-18	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.005	0.62	0.0	0.05	19.04	0.01	2.148	5.87	1.76	2.2	97.8	0.0	0.86	0.94	0.51	0.92	4.11	3356	416	2	0	3	24	0	logfile
✔	8ZND	60268	2024-07-18	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.48	0.0	0.04	16.94	0.00	2.274	5.00	0.29	1.7	98.3	0.0	1.62	0.47	0.53	0.92	4.10	3334	416	2	0	1	24	0	logfile
✔	8XD0	38261	2024-07-18	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.52	0.0	0.04	17.79	0.00	2.224	5.56	0.88	2.7	97.1	0.2	1.90	0.83	0.45	0.90	4.02	3357	417	2	0	2	14	0	logfile
✔	8XCW	38257	2024-07-18	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.005	0.54	0.0	0.04	17.03	0.00	2.215	7.84	1.47	3.1	96.9	0.0	1.83	0.43	0.49	0.92	3.80	3347	416	2	0	2	17	0	logfile
✔	7YAT	33719	2024-07-18	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.005	0.90	0.0	0.05	15.44	0.00	2.233	10.36	1.56	4.5	95.5	0.0	-4.89	0.34	0.65	0.92	7.27	4129	600	45	0	0	25	0	logfile
✔	8oL5	16949	2024-07-18	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.37	0.0	0.05	15.49	0.00	2.326	3.70	3.91	2.1	97.9	0.0	-1.20	1.02	0.55	0.88	5.14	2260	310	10	0	0	0	0	logfile
✔	8BDZ	15995	2024-07-18	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.57	0.0	0.04	14.26	0.00	2.204	9.27	1.64	1.7	98.3	0.0	3.02	0.42	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	7PY2	13708	2024-07-18	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.007	0.93	0.0	0.05	17.99	0.00	2.349	2.69	8.50	5.2	94.8	0.0	-3.95	1.39	0.49	0.88	6.22	2152	316	4	0	0	0	0	logfile
✔	8oL2	16942	2024-07-18	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.007	0.72	0.0	0.06	15.46	0.00	2.361	5.65	9.13	8.6	87.9	3.4	-3.19	0.46	0.43	0.90	5.94	2260	310	10	0	0	0	0	logfile
✔	8BER	16009	2024-07-18	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.60	0.0	0.04	14.36	0.00	2.165	11.56	0.82	4.5	95.5	0.0	3.15	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	7YNR	33969	2024-07-18	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.004	0.48	0.0	0.05	12.92	0.00	2.401	4.42	0.00	4.2	95.8	0.0	-1.94	0.22	0.42	0.88	6.14	2526	366	6	0	0	0	0	logfile
✔	8ACB	15345	2024-07-18	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.97	0.00	2.229	6.61	1.14	8.7	91.3	0.0	-0.45	1.20	0.20	0.84	3.77	1815	220	2	5	0	0	0	logfile

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