Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N5D	24186	2024-07-23	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.07	0.00	2.176	6.98	2.87	1.7	98.3	0.0	3.03	0.64	0.82	0.83	3.17	20593	2612	14	0	7	0	0	logfile
✔	7FiJ	31599	2024-07-18	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.163	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	8JAF	36126	2024-07-18	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.4	0.004	0.73	0.0	0.04	13.71	0.01	2.246	15.91	3.49	5.8	94.2	0.0	-1.82	0.92	0.67	0.60	1.97	3862	549	4	0	0	0	0	logfile
✔	7oTo	13063	2024-07-20	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.4	0.003	0.64	0.0	0.04	17.33	0.00	1.941	9.21	3.14	2.2	97.7	0.1	1.30	0.70	0.80	0.78	1.73	10333	1313	4	0	4	0	0	logfile
✔	8iKJ	35514	2024-07-18	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.005	0.75	0.0	0.04	13.85	0.01	2.158	10.89	1.54	3.4	96.6	0.0	1.49	1.06	0.80	0.79	2.21	4200	532	2	0	3	0	0	logfile
✔	7T2G	25612	2024-07-19	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.97	1.0	0.04	14.50	0.00	2.141	12.06	2.58	2.4	97.5	0.1	0.62	0.36	0.80	0.81	4.27	6922	898	5	0	3	8	0	logfile
✔	8VRW	43488	2024-07-20	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.070	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.004	0.66	0.0	0.04	13.65	0.01	2.108	15.31	2.60	5.3	94.7	0.0	-0.81	1.13	0.68	0.67	2.47	10413	1272	9	0	0	0	0	logfile
✔	7UWJ	26833	2024-07-19	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.20	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.65	0.0	0.04	14.99	0.01	2.243	9.91	3.01	5.6	94.4	0.0	-2.12	0.46	0.68	0.65	2.01	5314	664	6	0	6	0	0	logfile
✔	8KFZ	37209	2024-07-19	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.92	0.0	0.04	16.39	0.00	1.974	16.56	4.86	3.1	96.9	0.0	0.87	0.32	0.72	0.73	1.57	8966	1139	5	0	0	0	0	logfile
✔	7XBK	33104	2024-07-24	2022-03-21	3.7	2.43	3.78	1.9	0.005	0.86	0.0	0.05	16.04	0.01	2.095	5.74	0.00	2.9	97.0	0.0	-1.71	0.69	0.63	1.49	1.5	0.006	0.93	3.0	0.05	17.91	0.01	1.865	21.46	2.93	2.6	97.3	0.1	0.24	0.75	0.69	0.69	1.57	25745	3139	19	0	33	0	0	logfile
✔	7MDW	23782	2024-07-18	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	15.11	0.00	2.199	17.53	3.10	11.7	88.3	0.0	-2.94	1.34	0.56	0.49	1.65	3392	435	4	0	1	0	0	logfile
✔	8oR0	17114	2024-07-22	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.003	0.67	0.0	0.04	16.52	0.00	2.066	11.47	2.41	4.3	95.7	0.0	0.21	1.27	0.69	0.64	0.63	18823	2489	8	0	3	0	0	logfile
✔	7UWN	26837	2024-07-20	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.59	0.0	0.04	16.58	0.00	2.136	12.43	4.68	5.3	94.7	0.0	-0.89	0.30	0.66	0.63	0.69	10602	1325	12	0	11	0	0	logfile
✔	7UDS	26458	2024-07-22	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	17.29	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.003	0.65	0.0	0.04	15.41	0.00	2.114	10.50	2.98	4.0	96.0	0.0	-0.21	1.13	0.74	0.71	2.36	17032	2094	32	0	53	0	0	logfile
✔	8oM9	16971	2024-07-21	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.88	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.6	0.003	0.69	0.0	0.04	19.51	0.00	1.839	20.13	4.29	5.7	94.3	0.0	-0.74	0.48	0.68	0.66	0.72	13314	1548	6	44	4	0	0	logfile
✔	8J97	36090	2024-07-18	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.6	0.003	0.66	0.0	0.05	14.74	0.00	2.224	9.56	3.10	5.6	94.4	0.0	-0.18	0.44	0.73	0.71	2.95	3863	544	4	0	0	0	0	logfile
✔	8R2H	18842	2024-07-20	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.003	0.58	0.0	0.04	14.00	0.00	1.931	11.81	1.96	2.1	97.9	0.0	0.09	0.37	0.75	0.72	3.17	11484	1394	4	0	4	0	0	logfile
✔	8SPo	40680	2024-07-26	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	18.84	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.75	0.0	0.04	18.85	0.00	1.792	13.49	1.76	6.9	93.1	0.0	-0.96	1.33	0.57	0.49	1.17	31307	3428	22	154	6	0	0	logfile
✔	8XZJ	38798	2024-07-19	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.003	0.61	0.0	0.04	15.14	0.00	2.086	9.08	1.92	2.3	97.5	0.2	1.11	1.18	0.74	0.80	3.31	9106	1162	6	0	0	0	0	logfile
✔	7ZGU	14713	2024-07-27	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.55	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.003	0.72	0.0	0.04	17.41	0.00	2.075	12.50	3.02	6.1	93.9	0.0	-0.94	0.70	0.71	0.72	1.50	38940	4854	12	0	6	0	0	logfile

• Page 1 of 579
• next →