Table showing results for July 2024

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ELE	31182	2024-07-20	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	21.73	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.74	0.0	0.04	18.90	0.00	2.058	28.35	0.00	9.5	90.3	0.2	-1.83	1.67	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	6WTD	21894	2024-07-19	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.85	0.0	0.04	13.50	0.00	2.119	14.03	0.00	4.6	95.4	0.0	-2.14	1.92	0.56	0.72	—	9139	1233	16	0	0	0	0	logfile
✔	7ELD	31181	2024-07-20	2021-04-09	4.6	9.12	—	7.4	0.012	1.41	6.0	0.11	20.42	0.00	2.446	8.52	10.68	2.9	96.2	0.9	3.37	0.79	0.50	—	7.1	0.003	0.72	0.0	0.04	19.06	0.00	2.065	27.03	0.00	5.4	94.1	0.5	-0.07	1.46	0.88	0.78	—	11282	1137	2	109	0	0	0	logfile
✔	7Ai5	11791	2024-07-21	2020-09-26	4.4	4.82	4.47	4.4	0.014	1.85	5.0	0.10	18.26	0.01	2.472	3.75	1.14	3.3	96.7	0.0	-2.02	0.86	0.70	—	4.3	0.003	0.64	0.0	0.04	17.16	0.00	2.132	14.58	0.00	2.5	97.5	0.0	0.43	0.94	0.90	0.78	—	13376	1576	6	44	2	0	0	logfile
✔	7P16	13157	2024-07-18	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	16.47	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.71	0.0	0.04	14.57	0.00	2.160	11.13	0.00	3.4	96.6	0.0	0.82	1.48	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7XLT	33286	2024-07-19	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	18.80	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.004	0.72	0.0	0.04	16.83	0.00	2.086	24.40	0.00	7.7	92.3	0.0	-2.41	1.74	0.74	0.72	—	4985	431	4	80	0	0	0	logfile
✔	8G8B	29845	2024-07-21	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	28.76	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.007	0.74	0.0	0.04	29.00	0.01	2.105	28.71	0.00	3.3	96.7	0.0	1.11	1.96	0.90	0.82	—	14067	902	11	336	0	0	0	logfile
✔	7LV9	23530	2024-07-19	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.07	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.003	0.63	0.0	0.03	28.57	0.00	2.194	16.76	0.00	2.5	97.5	0.0	1.84	1.51	0.90	0.84	—	8238	581	8	190	0	0	0	logfile
✔	7RPW	24624	2024-07-20	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.68	0.0	0.04	18.70	0.00	1.118	17.19	0.00	9.6	90.4	0.1	-2.93	3.76	0.77	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	8G88	29843	2024-07-21	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.008	0.79	0.0	0.04	29.84	0.01	2.050	38.26	0.00	3.1	96.9	0.0	0.56	2.59	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7RRA	24657	2024-07-20	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.6	0.003	0.61	0.0	0.04	14.12	0.00	2.255	14.49	0.00	3.8	96.2	0.0	1.41	1.89	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile
✔	7o17	12692	2024-07-20	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.81	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.76	0.0	0.04	14.59	0.00	1.919	22.41	0.00	7.9	92.1	0.0	-1.85	0.54	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	8BGU	16036	2024-07-19	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	23.47	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.003	0.59	0.0	0.03	23.78	0.00	2.103	20.33	0.00	8.8	91.2	0.0	-0.76	2.44	0.92	0.87	—	4779	447	5	121	1	0	0	logfile
✔	7E2C	30954	2024-07-23	2021-02-05	4.18	4.23	—	4.1	0.008	1.50	3.0	0.08	15.12	0.01	1.675	10.10	0.94	15.3	83.6	1.1	-5.41	0.78	0.68	—	4.1	0.003	0.78	0.0	0.05	14.24	0.00	2.073	14.21	0.00	12.9	86.9	0.2	-3.24	0.69	0.76	0.68	—	23020	3295	11	0	0	0	0	logfile
✔	6ZPG	11338	2024-07-18	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	7.0	0.003	0.86	0.0	0.05	15.23	0.00	2.219	17.45	0.00	6.1	93.9	0.0	0.31	2.22	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	5G06	3366	2024-07-24	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.72	0.0	0.04	14.27	0.00	2.111	15.98	0.00	3.4	96.4	0.1	-0.28	1.77	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	7RPo	24618	2024-07-20	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.9	0.003	0.68	0.0	0.04	18.22	0.00	2.109	10.97	0.00	7.7	92.3	0.0	-1.92	1.70	0.75	0.70	—	10602	1179	9	62	5	0	0	logfile
✔	6PP8	20422	2024-07-26	2019-07-05	4.12	4.53	—	4.3	0.003	0.72	0.0	0.04	12.44	0.01	2.116	2.93	0.00	0.2	99.8	0.0	-2.36	0.80	0.76	—	4.3	0.005	0.66	0.0	0.04	12.86	0.00	1.865	11.08	0.00	5.1	94.9	0.0	-0.75	0.97	0.82	0.80	—	32335	2078	13	0	13	0	16234	logfile
✔	7Y5B	33615	2024-07-27	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	15.01	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	3.9	0.002	0.57	0.0	0.04	14.68	0.00	1.990	7.75	0.00	2.3	97.6	0.0	1.73	1.14	0.79	0.80	—	35959	4838	26	0	22	0	0	logfile
✔	7Y5C	33616	2024-07-27	2022-06-16	4.7	4.41	4.64	4.1	0.003	0.60	0.0	0.04	14.53	0.00	1.916	9.62	0.00	2.6	97.4	0.0	1.08	0.77	0.73	—	4.1	0.002	0.62	0.0	0.04	14.21	0.00	1.932	9.29	0.00	2.5	97.5	0.0	1.39	1.18	0.77	0.74	—	35993	4851	26	0	11	0	0	logfile

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