Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HN4	0246	2024-07-19	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.003	0.72	0.0	0.05	11.63	0.00	2.121	12.54	0.00	7.5	92.5	0.0	-0.35	1.15	0.76	0.77	—	5702	700	3	0	6	0	0	logfile
✔	7Q9i	13870	2024-07-26	2021-11-12	4.9	5.59	—	5.3	0.004	0.57	0.0	0.04	11.10	0.00	2.216	4.73	0.80	3.4	96.5	0.0	-0.34	0.76	0.63	—	5.3	0.003	0.68	0.0	0.05	11.64	0.00	2.027	18.16	0.00	4.4	95.6	0.0	-0.79	1.97	0.80	0.72	—	30966	3881	24	0	53	0	0	logfile
✔	6XYE	10649	2024-07-20	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.003	0.73	0.0	0.05	12.31	0.00	2.162	14.44	0.00	8.1	91.9	0.0	-1.22	2.24	0.72	0.70	—	9834	1293	6	0	0	0	0	logfile
✔	6AYG	7020	2024-07-20	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.63	0.00	2.162	4.19	0.00	3.6	96.4	0.0	2.60	0.83	0.83	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	6KLE	0709	2024-07-21	2019-07-30	4.5	4.63	—	4.4	0.003	0.66	0.0	0.04	14.12	0.00	2.199	13.77	0.07	7.6	92.4	0.0	-0.87	0.83	0.76	—	4.4	0.003	0.69	0.0	0.04	14.20	0.00	2.122	15.89	0.00	8.5	91.5	0.0	-0.69	0.49	0.84	0.79	—	12769	1592	3	7	2	0	0	logfile
✔	7R9K	24328	2024-07-19	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.53	0.0	0.04	8.08	0.00	1.906	9.97	0.00	4.4	95.6	0.0	0.09	2.08	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	5ZAK	6904	2024-07-20	2018-02-07	4.4	3.52	—	3.2	0.009	1.61	1.0	0.07	11.72	0.01	2.185	17.87	0.72	17.3	82.4	0.3	-5.20	0.80	0.64	—	3.3	0.003	0.95	0.0	0.05	13.30	0.01	2.134	25.56	0.00	14.9	85.1	0.0	-2.78	1.64	0.80	0.65	—	11112	1389	2	0	0	0	0	logfile
✔	6L2T	0814	2024-07-21	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.004	0.71	0.0	0.05	12.47	0.01	2.155	6.67	0.00	14.7	85.3	0.1	-3.87	0.49	0.60	0.76	—	13604	1889	3	0	0	0	0	logfile
✔	7EFD	31084	2024-07-18	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.003	0.71	0.0	0.04	14.51	0.00	1.848	6.17	0.00	4.4	95.6	0.0	0.99	0.47	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	7U1E	26299	2024-07-22	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	12.91	0.00	2.240	5.36	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.004	0.71	0.0	0.05	12.65	0.00	2.154	14.03	0.00	6.2	93.8	0.0	0.01	0.61	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✔	7NDB	12282	2024-07-25	2021-01-30	4.6	5.10	—	4.9	0.003	0.57	0.0	0.04	11.74	0.00	2.174	5.10	0.72	4.5	95.3	0.1	-0.78	0.82	0.72	—	4.9	0.003	0.66	0.0	0.05	11.75	0.00	2.146	14.74	0.00	3.9	96.1	0.0	-0.26	0.95	0.84	0.77	—	27184	3460	19	0	50	0	0	logfile
✔	6LXE	30006	2024-07-20	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.75	0.0	0.04	14.79	0.00	2.205	23.08	0.00	9.5	90.5	0.0	-2.05	1.68	0.85	0.72	—	6519	813	4	0	2	0	0	logfile
✔	6WKT	21708	2024-07-18	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.55	0.0	0.03	16.09	0.00	2.218	9.65	0.00	3.8	96.2	0.0	4.32	1.34	0.63	0.74	3.16	3152	424	4	0	0	0	0	logfile
✔	6VAB	21135	2024-07-18	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	5ZAL	6905	2024-07-21	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	15.07	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.003	0.84	0.0	0.05	15.04	0.01	2.110	26.49	0.00	13.4	86.3	0.2	-2.86	0.84	0.84	0.61	—	12346	1389	3	58	0	0	0	logfile
✔	5Z3L	6879	2024-07-22	2018-01-08	4.31	4.45	—	4.3	0.003	0.61	0.0	0.04	24.56	0.00	2.197	14.10	0.35	9.9	90.0	0.1	-3.74	0.86	0.77	—	4.3	0.003	0.72	0.0	0.04	26.15	0.00	2.114	17.46	0.00	6.4	93.6	0.0	-0.29	2.16	0.88	0.81	—	16783	1347	11	292	0	0	0	logfile
✔	6KUV	9888	2024-07-21	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	11.91	0.01	2.206	6.18	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.70	0.0	0.04	14.86	0.00	2.134	10.59	0.00	7.4	92.5	0.1	-1.04	2.91	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6JMR	9850	2024-07-20	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.10	0.01	1.331	7.77	0.56	7.1	92.8	0.1	-4.05	0.83	0.78	—	4.1	0.003	0.70	0.0	0.04	13.00	0.00	2.115	12.92	0.00	6.2	93.8	0.0	-2.06	0.77	0.84	0.78	—	9809	1223	12	0	69	0	0	logfile
✔	7R6N	24283	2024-07-19	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.98	0.01	1.746	17.28	0.00	0.0	0.0	0.0	—	1.27	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	8A43	15135	2024-07-26	2022-06-10	4.09	3.90	4.09	3.7	0.008	1.01	0.0	0.05	15.37	0.01	2.028	24.41	0.41	15.2	84.6	0.2	-4.94	0.78	0.68	—	3.7	0.003	0.71	0.0	0.04	14.48	0.00	2.025	13.21	0.00	8.4	91.6	0.0	-1.84	0.65	0.78	0.67	—	31109	3914	12	0	0	0	0	logfile

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