Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2024-07-18	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.004	0.81	0.0	0.04	15.68	0.00	2.242	15.40	2.78	11.2	87.5	1.2	-1.93	3.97	0.23	0.60	-0.89	1364	82	1	0	0	0	711	logfile
✔	7V66	31736	2024-07-26	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.61	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	8iZZ	35878	2024-07-18	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.45	2.0	0.14	27.14	0.01	2.033	45.13	22.73	48.5	48.5	3.0	-7.00	3.54	0.30	0.50	-0.67	1342	198	22	0	0	0	0	logfile
✔	7ZPK	14856	2024-07-24	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	15.30	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.67	0.0	0.04	17.36	0.00	1.910	21.18	2.63	5.7	94.3	0.0	0.37	2.36	0.86	0.72	-0.64	25935	1513	3	55	0	0	12760	logfile
✔	8ERL	28554	2024-07-19	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.73	0.0	0.04	15.84	0.00	2.113	23.33	3.43	8.8	91.2	0.0	-2.32	1.03	0.87	0.79	-0.33	6600	830	2	0	0	0	0	logfile
✘	8B3Q	15833	2024-07-24	2022-09-16	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.09	—	—	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	6.31	—	—	—	-0.31	25095	3395	75	0	0	0	0	logfile
✔	8EFP	28087	2024-07-18	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.004	0.89	0.0	0.04	18.96	0.00	2.081	25.08	4.02	11.8	88.2	0.0	-2.48	0.89	0.84	0.73	-0.30	4705	594	2	0	0	0	0	logfile
✔	8T23	40979	2024-07-19	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.3	0.003	0.82	0.0	0.05	18.12	0.01	2.123	17.32	3.81	11.5	88.5	0.0	-2.57	1.42	0.62	0.55	-0.26	6451	781	6	0	6	0	0	logfile
✔	7LC9	23270	2024-07-18	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.004	0.68	0.0	0.05	17.25	0.00	2.139	28.50	10.32	11.2	88.8	0.0	-3.62	0.66	0.69	0.79	-0.22	3497	525	12	0	0	0	0	logfile
✔	7UiC	26543	2024-07-22	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.0	0.002	0.67	0.0	0.04	14.92	0.00	2.124	11.92	0.96	1.9	98.0	0.0	0.89	0.61	0.81	0.71	-0.21	17303	2138	6	0	0	0	0	logfile
✘	8B3P	15832	2024-07-22	2022-09-16	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.91	—	—	1.32	—	—	—	—	—	—	—	—	—	—	—	—	—	6.34	—	—	—	-0.21	17620	2370	55	0	0	0	0	logfile
✔	7TTS	26122	2024-07-22	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.65	0.0	0.04	14.33	0.00	1.834	25.44	0.79	4.0	95.9	0.1	2.26	1.10	0.73	0.47	-0.20	18793	2686	12	0	23	0	0	logfile
✔	6C9K	7437	2024-07-27	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.77	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.002	0.57	0.0	0.04	14.77	0.00	2.147	14.49	1.69	1.3	98.7	0.0	3.59	0.88	0.81	0.65	-0.19	37632	4923	24	0	0	0	0	logfile
✔	7VZF	32227	2024-07-18	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.92	0.0	0.05	18.65	0.00	2.097	12.69	6.03	18.5	81.5	0.0	-4.26	1.85	0.37	0.63	-0.15	2628	363	3	0	0	0	0	logfile
✔	8E55	27903	2024-07-20	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.57	0.0	0.03	16.27	0.00	2.251	11.21	1.85	1.6	98.4	0.0	4.07	1.44	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6CXC	7774	2024-07-21	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	11.60	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.81	0.0	0.05	15.93	0.00	2.076	23.13	3.74	7.2	92.8	0.0	-2.20	2.13	0.72	0.75	-0.11	15196	1945	18	0	6	0	0	logfile
✔	7RTV	24690	2024-07-18	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.35	0.00	2.201	16.81	5.19	2.8	97.2	0.0	3.26	0.50	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7PQG	13593	2024-07-18	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.04	0.0	0.06	15.86	0.00	2.132	35.30	3.36	7.6	92.4	0.0	-0.93	0.68	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	7oCK	12809	2024-07-25	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.006	1.01	1.0	0.05	17.05	0.01	1.953	42.81	3.24	6.6	93.3	0.1	-1.45	1.41	0.87	0.65	-0.05	28276	3666	12	0	0	0	0	logfile
✔	7N8N	24238	2024-07-20	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	27.93	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.004	0.75	0.0	0.04	28.76	0.01	2.141	21.14	2.63	6.8	92.9	0.3	-0.72	1.28	0.87	0.80	-0.05	11121	798	6	250	0	0	0	logfile

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