Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N5D	24186	2024-07-23	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.07	0.00	2.176	6.98	2.87	1.7	98.3	0.0	3.03	0.64	0.82	0.83	3.17	20593	2612	14	0	7	0	0	logfile
✔	7oTo	13063	2024-07-20	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.4	0.003	0.64	0.0	0.04	17.33	0.00	1.941	9.21	3.14	2.2	97.7	0.1	1.30	0.70	0.80	0.78	1.73	10333	1313	4	0	4	0	0	logfile
✔	7T2G	25612	2024-07-19	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.97	1.0	0.04	14.50	0.00	2.141	12.06	2.58	2.4	97.5	0.1	0.62	0.36	0.80	0.81	4.27	6922	898	5	0	3	8	0	logfile
✔	7UDS	26458	2024-07-22	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	17.29	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.003	0.65	0.0	0.04	15.41	0.00	2.114	10.50	2.98	4.0	96.0	0.0	-0.21	1.13	0.74	0.71	2.36	17032	2094	32	0	53	0	0	logfile
✘	7N5G	24189	2024-07-18	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2926	371	2	0	1	0	0	logfile
✔	7N5E	24187	2024-07-22	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.8	0.004	0.56	0.0	0.04	16.08	0.00	2.132	6.51	2.49	1.7	98.3	0.0	3.22	0.57	0.77	0.79	3.21	17915	2176	14	0	7	0	0	logfile
✔	8TXR	41704	2024-07-22	2023-08-24	3.8	3.13	—	1.5	0.004	0.46	0.0	0.04	11.55	0.00	1.930	3.65	0.59	1.8	98.2	0.0	0.92	0.88	0.81	1.44	1.6	0.003	0.72	0.0	0.04	16.76	0.00	2.117	9.92	1.61	1.8	98.2	0.0	2.84	1.35	0.89	0.82	0.57	19020	2388	20	0	0	0	0	logfile
✔	8iKJ	35514	2024-07-18	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.005	0.75	0.0	0.04	13.85	0.01	2.158	10.89	1.54	3.4	96.6	0.0	1.49	1.06	0.80	0.79	2.21	4200	532	2	0	3	0	0	logfile
✔	8JAF	36126	2024-07-18	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.4	0.004	0.73	0.0	0.04	13.71	0.01	2.246	15.91	3.49	5.8	94.2	0.0	-1.82	0.92	0.67	0.60	1.97	3862	549	4	0	0	0	0	logfile
✔	8EZJ	28743	2024-07-23	2022-11-01	3.3	2.34	—	1.5	0.004	0.55	0.0	0.04	11.20	0.00	2.195	10.74	0.23	8.6	91.4	0.0	0.57	0.75	0.77	1.96	1.9	0.003	0.65	0.0	0.04	14.84	0.00	2.155	12.30	2.63	7.9	92.0	0.0	0.73	0.40	0.75	0.76	1.60	23215	2891	6	0	2	0	0	logfile
✔	7R40	14250	2024-07-25	2022-02-08	2.9	2.41	2.92	1.5	0.004	0.73	0.0	0.05	14.00	0.01	2.324	4.76	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.6	0.005	0.78	0.0	0.05	15.88	0.00	2.129	16.34	3.31	6.5	93.5	0.0	-1.55	0.69	0.72	0.70	1.64	30615	3840	24	0	51	0	0	logfile
✔	7MDW	23782	2024-07-18	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	15.11	0.00	2.199	17.53	3.10	11.7	88.3	0.0	-2.94	1.34	0.56	0.49	1.65	3392	435	4	0	1	0	0	logfile
✔	8KFZ	37209	2024-07-19	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.92	0.0	0.04	16.39	0.00	1.974	16.56	4.86	3.1	96.9	0.0	0.87	0.32	0.72	0.73	1.57	8966	1139	5	0	0	0	0	logfile
✔	7SEP	25074	2024-07-19	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.9	0.004	0.68	0.0	0.05	16.57	0.01	2.155	14.46	5.60	4.4	95.6	0.0	0.05	0.84	0.72	0.72	2.25	7641	930	2	0	0	0	0	logfile
✔	7o6E	12738	2024-07-26	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.48	0.0	0.03	18.19	0.00	2.218	3.52	0.58	0.5	99.5	0.0	4.44	0.29	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	8J97	36090	2024-07-18	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.6	0.003	0.66	0.0	0.05	14.74	0.00	2.224	9.56	3.10	5.6	94.4	0.0	-0.18	0.44	0.73	0.71	2.95	3863	544	4	0	0	0	0	logfile
✔	8XZH	38796	2024-07-19	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.56	0.0	0.04	16.22	0.00	2.174	7.47	2.55	2.0	98.0	0.0	1.09	0.94	0.77	0.85	3.93	9048	1159	6	0	0	0	0	logfile
✔	8R2H	18842	2024-07-20	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.003	0.58	0.0	0.04	14.00	0.00	1.931	11.81	1.96	2.1	97.9	0.0	0.09	0.37	0.75	0.72	3.17	11484	1394	4	0	4	0	0	logfile
✔	7UWN	26837	2024-07-20	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.59	0.0	0.04	16.58	0.00	2.136	12.43	4.68	5.3	94.7	0.0	-0.89	0.30	0.66	0.63	0.69	10602	1325	12	0	11	0	0	logfile
✔	7XJG	33226	2024-07-21	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.59	0.0	0.04	23.94	0.00	2.108	7.31	5.53	4.3	95.7	0.0	0.45	0.24	0.79	0.80	2.70	13167	1066	12	216	2	0	0	logfile

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